View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4499-Insertion-7 (Length: 611)

Name: NF4499-Insertion-7
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4499-Insertion-7
NF4499-Insertion-7
[»] chr1 (1 HSPs)
chr1 (9-611)||(40551497-40552096)


Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 9 - 611
Target Start/End: Original strand, 40551497 - 40552096
Alignment:
Q  9 ttatttgcctagttcagtaccttgcaagcctctaaaagtaacaaataataactaagataggatgtggctaggtattaaacaaagtgctgatatgggtatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40551497 ttatttgcctagttcagtaccttgcaagcctctaaaagtaacaaatagtaactaagataggatgtagctaggtattaaacaaagtgctgatatgggtatc 40551596  T
Q  109 ctaaaagggatgagatacaaaagtttaactagatttgtgttaatcaattggaatctgtctattcaccgaaaagtcttctccatgcaaaattttacatatc 208  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40551597 ctaaaaggtatgagatacaaaagtttaactagatttgtgttaatcaattggaatctgtctattcaacgaaaagtcttctccatgcaaaattttacatatc 40551696  T
Q  209 tgtaccctaccannnnnnnccccaaatccatacaaaagaggacatgatctttatttgaggtgaaatataatttgacactttcaaaaccagaaatataaaa 308  Q
    ||||||||||||       ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40551697 tgtaccctaccatttttttccccaaatccatagaaa-gaggacatgatctttatttgaggtgaaatataatttgacactttcaaaaccagaaatataaaa 40551795  T
Q  309 tttgtacctctgcaatgatttctgctgaactaacaccagtctcttctctcagctccctaatagctgcatttctcggatcctcaccttcatcaataccacc 408  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40551796 tttgtacctctgcaatgatttctgctgaagtaacaccagtctcttctctcagctccctaatagctgcatttctcggatcctcaccttcatcaataccacc 40551895  T
Q  409 ctacattaacatgattacaaacttatatacatcataannnnnnnnnngcaagaaaaaatattcataacttaatccatttatttcaattaattgtataaaa 508  Q
    ||||||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40551896 ctacattaacatgattacaaacttatatacatcatca--ttttttttgcaagaaaaaatattcataacttaatccatttatttcaattaattgtataaaa 40551993  T
Q  509 atgaatcacctgtggcatttgccatgaattcggaatatccaaccttgaagccgaaaaaacctgcataacaaaaatcatcaattattagctgaagcactgt 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  40551994 atgaatcacctgtggcatttgccatgaattcggaatatccaaccttgaagccgaaaaaacctgcataacaaaaatcatcaatcattagctgaaacactat 40552093  T

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