View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499-Insertion-8 (Length: 554)
Name: NF4499-Insertion-8
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 226 - 554
Target Start/End: Complemental strand, 53336755 - 53336427
Alignment:
| Q |
226 |
tagtaaagatgttccgactttgtgaatgcggtaaattgtcgagacatccaatttctaaattaagatgatgtttgaggcaaagaaaatgtcgtcgttacgg |
325 |
Q |
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| T |
53336755 |
tagtaaagatgttccgactttgtgaatgcggtaaattgccaagacatccaatttctaaattaagatgatgtttgaggcaaagaaaatgtcgtcgttacgg |
53336656 |
T |
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| Q |
326 |
cgacactgttatgatccttgcaacccagtgctttaagtattttccacgacaccttaccggagctccgattcaagtccaaatttccacttgtttccgaagc |
425 |
Q |
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| T |
53336655 |
cgacactgttatgatccttgcaactcagtgctttaagtattttccacgacaccttaccggagctccgattcaagttcaaatttccacttgtttccgaagc |
53336556 |
T |
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| Q |
426 |
cggaaacatacttttcgatggattccggcgaacctgccggtttttaatatcattgagttccatttccggcggattcttcatcttcccaaacataagagaa |
525 |
Q |
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| T |
53336555 |
cggaaacatacttttcgatggattccggcgaacctgacggtttttaatatcattgagttccatttccggcggattcttcatcttcccaaacataagagaa |
53336456 |
T |
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| Q |
526 |
taccagcgcggtttcattgccttcttcgc |
554 |
Q |
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| T |
53336455 |
taccagcgtggtttcattgccttcttcgc |
53336427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 53336967 - 53336832
Alignment:
| Q |
8 |
ctaacaaaattacaagggcaataaggtcaagataataagaattttcaccccatcccataggcgcacacctcaattgaacc-gggttcttcgcaatttgtc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |||| |
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| T |
53336967 |
ctaacaaaattacaagggcaataaggtcaagataataagaattttcaccccatcccataggtgcacacctcaattgaaccaggattcttcgcaatatgtc |
53336868 |
T |
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| Q |
107 |
gcatacaaacattcaaaacatttaataattcttgga |
142 |
Q |
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| T |
53336867 |
gcatacaaacattcaaaacatttaataatccttgga |
53336832 |
T |
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