View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4499-Insertion-9 (Length: 504)

Name: NF4499-Insertion-9
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4499-Insertion-9
NF4499-Insertion-9
[»] chr1 (10 HSPs)
chr1 (8-491)||(2487527-2488010)
chr1 (120-182)||(7218113-7218175)
chr1 (119-168)||(15361681-15361730)
chr1 (120-174)||(25006081-25006135)
chr1 (119-177)||(30257651-30257709)
chr1 (117-193)||(9656616-9656693)
chr1 (125-174)||(27887165-27887214)
chr1 (119-168)||(28467360-28467409)
chr1 (125-177)||(17269224-17269276)
chr1 (147-179)||(39348009-39348041)
[»] chr5 (1 HSPs)
chr5 (119-174)||(34205207-34205262)
[»] chr4 (3 HSPs)
chr4 (119-174)||(49219107-49219162)
chr4 (119-193)||(51630079-51630154)
chr4 (133-173)||(11842197-11842237)
[»] chr7 (3 HSPs)
chr7 (117-167)||(49060506-49060556)
chr7 (121-168)||(24909634-24909681)
chr7 (121-165)||(24895326-24895370)
[»] chr3 (4 HSPs)
chr3 (119-177)||(21872315-21872373)
chr3 (125-173)||(24235731-24235779)
chr3 (119-173)||(37689432-37689486)
chr3 (125-175)||(53848109-53848158)
[»] chr2 (4 HSPs)
chr2 (119-177)||(43141839-43141897)
chr2 (119-174)||(11513866-11513921)
chr2 (119-177)||(43199382-43199440)
chr2 (142-170)||(20258486-20258514)
[»] chr6 (4 HSPs)
chr6 (119-175)||(4006682-4006738)
chr6 (117-177)||(18264295-18264355)
chr6 (105-166)||(27595622-27595683)
chr6 (105-177)||(2514656-2514728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (119-174)||(27544-27599)
[»] chr8 (3 HSPs)
chr8 (105-174)||(1470903-1470972)
chr8 (119-176)||(34770860-34770917)
chr8 (120-176)||(29973050-29973106)


Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Complemental strand, 2488010 - 2487527
Alignment:
Q  8 gttccattgaacaagccctgcatacaccaaacttcttttgtcagtgtgagacgtcaaatcaaaatcatttaaatccgtgtttgtataaacaacttaattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2488010 gttccattgaacaagccctgcatacaccaaacttcttttgtcagtgtgagacgtcaaatcaaaatcatttaaatccgtgtttgtataaacaacttaattc 2487911  T
Q  108 tataatgataaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgcagaattttgaaaataggaaacaatggaaa 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487910 tataatgacaaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgcagaattttgaaaataggaaacaatggaaa 2487811  T
Q  208 taacataaacatgccttggttgacagattcaggaggactaatttgactgctcgaactactttgaagatcagaagaaatactcatcgttattccactcgaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487810 taacataaacatgccttggttgacagattcaggaggactaatttgactgctcgaactactttgaagatcagaagaaatactcatcgttattccactcgaa 2487711  T
Q  308 gaaacacttctccgcgaccgagcttcactatgatccttttcaaaagtgctgctgctccagaagcctgatgatccatcatctttagtcacggtttggcctt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487710 gaaacacttctccgcgaccgagcttcactatgatccttttcaaaagtgctgctgctccagaagcctgatgatccatcatctttagtcacggtttggcctt 2487611  T
Q  408 gaattatttctcccttacatccctcatccattgaaacagtagctcgaggtttttcgcggcttctaagacaacctatgctctatc 491  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2487610 gaattatttctcccttacatccctcatccattgaaacagtagcttgaggtttttcgcggcttctaagacaacctatgctctatc 2487527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 7218175 - 7218113
Alignment:
Q  120 taaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgcagaa 182  Q
    |||| |||||||||||| |||  |||||||||||||||| ||||||||| |||||||| ||||    
T  7218175 taaaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaa 7218113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 15361681 - 15361730
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataa 168  Q
    ||||||||||||||||||||||  |||||||||||||| | |||||||||    
T  15361681 ataaagtaaagtcaaattattttcatataagctataagctgttttcataa 15361730  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 25006135 - 25006081
Alignment:
Q  120 taaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 174  Q
    |||| |||||||||||| |||  |||||||||||||||| ||||||||| |||||    
T  25006135 taaaataaagtcaaattgttttcatataagctataagttgttttcataagctatc 25006081  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 30257651 - 30257709
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 177  Q
    ||||| |||||||||| | |||  ||||||||| |||||| ||||||||||||||||||    
T  30257651 ataaaataaagtcaaactgtttccatataagctttaagttgttttcataaactatcctg 30257709  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 9656616 - 9656693
Alignment:
Q  117 aaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgca-gaattttgaaaata 193  Q
    ||||||| |||||| |||||||||  |||||||||||||| | | ||||||| |||||||| | ||||| ||||||||    
T  9656616 aaataaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggatgaattatgaaaata 9656693  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 27887214 - 27887165
Alignment:
Q  125 taaagtcaaattatttggatataagctataagttattttcataaactatc 174  Q
    ||||||||||  ||||  |||||||||||||||| |||||||||||||||    
T  27887214 taaagtcaaacaatttccatataagctataagttgttttcataaactatc 27887165  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 28467409 - 28467360
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataa 168  Q
    ||||| ||||||||||||||||  |||||||||| ||||| |||||||||    
T  28467409 ataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 17269224 - 17269276
Alignment:
Q  125 taaagtcaaattatttggatataagctataagttattttcataaactatcctg 177  Q
    |||||||||||| |||  |||||||| ||||||| ||||||||| ||||||||    
T  17269224 taaagtcaaattgttttcatataagcaataagttgttttcataagctatcctg 17269276  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 39348041 - 39348009
Alignment:
Q  147 aagctataagttattttcataaactatcctgca 179  Q
    |||||||||||| ||||||||||||||||||||    
T  39348041 aagctataagttgttttcataaactatcctgca 39348009  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 34205207 - 34205262
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 174  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||| |||||    
T  34205207 ataaagtaaagtcaaattatttttatataagctataagttgttttcataagctatc 34205262  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 49219107 - 49219162
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 174  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  49219107 ataaaataaagtcaaattattttcatataagctataagttgttttcataaactatc 49219162  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 51630079 - 51630154
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctgcagaattt-tgaaaata 193  Q
    ||||| |||||| ||||| ||| ||||||||||||||| ||||||||||| ||||| || ||||||| ||||||||    
T  51630079 ataaaataaagttaaattgttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaata 51630154  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 11842197 - 11842237
Alignment:
Q  133 aattatttggatataagctataagttattttcataaactat 173  Q
    ||||||||  |||||||||||||||| ||||||||||||||    
T  11842197 aattattttcatataagctataagttgttttcataaactat 11842237  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 49060506 - 49060556
Alignment:
Q  117 aaataaagtaaagtcaaattatttggatataagctataagttattttcata 167  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  49060506 aaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 24909634 - 24909681
Alignment:
Q  121 aaagtaaagtcaaattatttggatataagctataagttattttcataa 168  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||    
T  24909634 aaagtaaagtcaaattattttcatataagctataagttgttttcataa 24909681  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 24895326 - 24895370
Alignment:
Q  121 aaagtaaagtcaaattatttggatataagctataagttattttca 165  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||    
T  24895326 aaagtaaagtcaaattattttcatataagctataagttgttttca 24895370  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 21872373 - 21872315
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 177  Q
    ||||| ||| |||||||| ||| ||||||||||||||||| ||||||||| ||||||||    
T  21872373 ataaaataaggtcaaatttttttgatataagctataagttgttttcataagctatcctg 21872315  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 24235779 - 24235731
Alignment:
Q  125 taaagtcaaattatttggatataagctataagttattttcataaactat 173  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| ||||    
T  24235779 taaagtcaaactatttgaatataagctataagttgttttcataagctat 24235731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 37689486 - 37689432
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactat 173  Q
    |||||||||||| |||||||||  |||||||||||||  ||||||||||| ||||    
T  37689486 ataaagtaaagttaaattattttcatataagctataaactattttcataagctat 37689432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 53848158 - 53848109
Alignment:
Q  125 taaagtcaaattatttggatataagctataagttattttcataaactatcc 175  Q
    |||||||||||| ||| ||||||||||| | ||||||||||||||||||||    
T  53848158 taaagtcaaattgttttgatataagctaca-gttattttcataaactatcc 53848109  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 43141839 - 43141897
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 177  Q
    |||||||||||||||||| |||  |||||||||||||| | ||||||||| ||||||||    
T  43141839 ataaagtaaagtcaaattgtttccatataagctataagatgttttcataagctatcctg 43141897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 11513866 - 11513921
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 174  Q
    ||||| |||||||||||| |||  |||||||||||||||| ||||||||| |||||    
T  11513866 ataaaataaagtcaaattgttttcatataagctataagttgttttcataagctatc 11513921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 43199382 - 43199440
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 177  Q
    ||||| |||||| ||||||| |   ||||||||||||||| ||||||||||||||||||    
T  43199382 ataaaataaagttaaattatcttcgtataagctataagttgttttcataaactatcctg 43199440  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 20258486 - 20258514
Alignment:
Q  142 gatataagctataagttattttcataaac 170  Q
    |||||||||||||||||||||||||||||    
T  20258486 gatataagctataagttattttcataaac 20258514  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 4006682 - 4006738
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcc 175  Q
    ||||| |||||||||||| |||  |||||||||||||||| ||||||||| ||||||    
T  4006682 ataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatcc 4006738  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 18264295 - 18264355
Alignment:
Q  117 aaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 177  Q
    |||||||||||||||||||| |||  ||| ||| |||||| ||||||| ||||||||||||    
T  18264295 aaataaagtaaagtcaaattgttttcatacaagttataagctattttcttaaactatcctg 18264355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 27595683 - 27595622
Alignment:
Q  105 ttctataatgataaataaagtaaagtcaaattatttggatataagctataagttattttcat 166  Q
    ||||||||| | | ||||| ||||||||||||||||  ||||||||| ||||||| ||||||    
T  27595683 ttctataataaaagataaaataaagtcaaattattttcatataagctgtaagttaatttcat 27595622  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 2514656 - 2514728
Alignment:
Q  105 ttctataatgataaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcctg 177  Q
    ||||||||| | | ||||| |||||||||| || ||  |||| ||||||||||||||||||||| || |||||    
T  2514656 ttctataataaaagataaaataaagtcaaactaattttatatgagctataagttattttcataagctgtcctg 2514728  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 27544 - 27599
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 174  Q
    ||||| |||||||||||| |||  |||||| ||||||||| |||||||||||||||    
T  27544 ataaaataaagtcaaattgttttcatataaactataagttgttttcataaactatc 27599  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 1470972 - 1470903
Alignment:
Q  105 ttctataatgataaataaagtaaagtcaaattatttggatataagctataagttattttcataaactatc 174  Q
    ||||||||| | | ||||| ||||||||||||| ||  |||||||||||||| | ||||||||| |||||    
T  1470972 ttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcataacctatc 1470903  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 34770860 - 34770917
Alignment:
Q  119 ataaagtaaagtcaaattatttggatataagctataagttattttcataaactatcct 176  Q
    ||||| |||||||||||| |||  || ||||||||||||| ||||||||| |||||||    
T  34770860 ataaaataaagtcaaattgttttcatttaagctataagttgttttcataagctatcct 34770917  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 29973050 - 29973106
Alignment:
Q  120 taaagtaaagtcaaattatttggatataagctataagttattttcataaactatcct 176  Q
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T  29973050 taaaataaagtcaaactattttcacataagctataagttgttttcataagctatcct 29973106  T

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