View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4499_high_8 (Length: 219)

Name: NF4499_high_8
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4499_high_8
NF4499_high_8
[»] chr1 (4 HSPs)
chr1 (21-219)||(29452568-29452766)
chr1 (20-219)||(29467041-29467240)
chr1 (20-205)||(29423962-29424147)
chr1 (21-219)||(29442576-29442774)
[»] chr2 (23 HSPs)
chr2 (27-219)||(14551054-14551245)
chr2 (39-143)||(10336621-10336725)
chr2 (58-185)||(8572755-8572882)
chr2 (39-159)||(10372676-10372796)
chr2 (61-166)||(9292715-9292820)
chr2 (39-154)||(9321790-9321905)
chr2 (58-159)||(9316816-9316920)
chr2 (58-142)||(9283428-9283512)
chr2 (61-161)||(10353937-10354037)
chr2 (39-134)||(9329418-9329513)
chr2 (58-133)||(12011847-12011922)
chr2 (39-136)||(10348620-10348717)
chr2 (39-114)||(9060333-9060408)
chr2 (38-143)||(9275333-9275438)
chr2 (69-134)||(9357935-9358000)
chr2 (60-133)||(12018170-12018243)
chr2 (58-114)||(9365434-9365490)
chr2 (60-143)||(7114901-7114984)
chr2 (27-133)||(7612716-7612822)
chr2 (58-144)||(12005419-12005505)
chr2 (58-128)||(11986779-11986849)
chr2 (26-133)||(8578747-8578854)
chr2 (27-126)||(17565337-17565436)
[»] chr8 (1 HSPs)
chr8 (58-209)||(41965976-41966130)
[»] scaffold0667 (1 HSPs)
scaffold0667 (39-162)||(5250-5373)
[»] chr3 (1 HSPs)
chr3 (58-182)||(37463293-37463417)
[»] chr4 (1 HSPs)
chr4 (58-161)||(26575671-26575774)
[»] chr5 (1 HSPs)
chr5 (48-128)||(36225575-36225655)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 29452568 - 29452766
Alignment:
Q  21 accggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaac 120  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452568 accggtatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaac 29452667  T
Q  121 ttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaac 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452668 ttcacctccaaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaac 29452766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 29467041 - 29467240
Alignment:
Q  20 caccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaa 119  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29467041 caccggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaa 29467140  T
Q  120 cttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaac 219  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  29467141 cttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaac 29467240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 29424147 - 29423962
Alignment:
Q  20 caccggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaa 119  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||     
T  29424147 caccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaag 29424048  T
Q  120 cttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaac 205  Q
    ||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29424047 cttcacctccataattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaac 29423962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 29442576 - 29442774
Alignment:
Q  21 accggtatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaac 120  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||    
T  29442576 accggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaac 29442675  T
Q  121 ttcacctccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaac 219  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||| | ||||||||||||||||||||| || ||||||    
T  29442676 ttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaac 29442774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 14551245 - 14551054
Alignment:
Q  27 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 126  Q
    ||||||||||||||||||  |||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14551245 atcctctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacc 14551146  T
Q  127 tccaaaattccctcaatcgttccttaattcttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaac 219  Q
    |  |||||||||||||| |||||||||| ||||||||||| ||   | |||||||||||||||||||||||||||||||||||||||||||||    
T  14551145 t-aaaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaac 14551054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 10336725 - 10336621
Alignment:
Q  39 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 138  Q
    ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||| ||||||||||    
T  10336725 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccc 10336626  T
Q  139 tcaat 143  Q
    |||||    
T  10336625 tcaat 10336621  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 8572755 - 8572882
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 157  Q
    |||||||||| ||||| |||||||||||| ||||  |||||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||  |    
T  8572755 tccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcat 8572854  T
Q  158 tcgacacaactctgttttctaccaaatc 185  Q
    ||||| |||||  | | |||||||||||    
T  8572855 tcgacgcaactacgatatctaccaaatc 8572882  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 10372796 - 10372676
Alignment:
Q  39 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 138  Q
    ||||||||| |||| ||  |||||||||| ||||| ||||||||| || ||||  |||||||||| ||||| |||||||| |||||||||||||||||||    
T  10372796 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccc 10372697  T
Q  139 tcaatcgttccttaattcttc 159  Q
    ||||||| |||||||| ||||    
T  10372696 tcaatcgatccttaatccttc 10372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 9292820 - 9292715
Alignment:
Q  61 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 160  Q
    ||||||| ||||  |||||||||||| ||||||||||||||||||||| |||||  || ||||||||| ||||||||||||| || |||||||| |||||    
T  9292820 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 9292721  T
Q  161 acacaa 166  Q
    ||||||    
T  9292720 acacaa 9292715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 9321905 - 9321790
Alignment:
Q  39 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 138  Q
    ||||||||| |||| ||  ||| |||||| ||||| || ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||| |||||||||    
T  9321905 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccc 9321806  T
Q  139 tcaatcgttccttaat 154  Q
    ||| ||| ||||||||    
T  9321805 tcagtcgatccttaat 9321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 9316920 - 9316816
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaa---aattccctcaatcgttccttaat 154  Q
    |||||||||| ||||| |||||||||||| ||||  |||| |||||||||||||||||||| ||||||||| ||   |||||||||||||| ||||||||    
T  9316920 tccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaat 9316821  T
Q  155 tcttc 159  Q
     ||||    
T  9316820 ccttc 9316816  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 9283428 - 9283512
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaa 142  Q
    |||||||||| ||||| || |||||||||| ||||||||| ||||||||||| |||||||| ||||||||| ||| |||||||||    
T  9283428 tccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 10354037 - 10353937
Alignment:
Q  61 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattcttcg 160  Q
    ||||||| ||||| ||||||||| || ||||||||||||||||  |||| |||||||| |||||||||  |||||||| |||||  ||||||||||||||    
T  10354037 gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg 10353938  T
Q  161 a 161  Q
    |    
T  10353937 a 10353937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 9329513 - 9329418
Alignment:
Q  39 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 134  Q
    ||||||||| |||| ||  |||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||  || ||||||||| |||||    
T  9329513 ttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 12011847 - 12011922
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 133  Q
    |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||| ||||    
T  12011847 tccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 10348717 - 10348620
Alignment:
Q  39 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 136  Q
    ||||||||| |||| ||  |||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  10348717 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 9060333 - 9060408
Alignment:
Q  39 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 114  Q
    |||||||| ||||| ||  |||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||    
T  9060333 ttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttca 9060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 9275438 - 9275333
Alignment:
Q  38 gttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattcc 137  Q
    |||||| |||||||| ||  || ||||||| |||| ||||||||||||| ||||  | || ||||| |||||||||||||| ||||| ||| ||||||||    
T  9275438 gttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattcc 9275339  T
Q  138 ctcaat 143  Q
    ||||||    
T  9275338 ctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 9358000 - 9357935
Alignment:
Q  69 tcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaat 134  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||| |||||    
T  9358000 tcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 12018170 - 12018243
Alignment:
Q  60 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaa 133  Q
    |||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||| ||| ||||| ||| ||||    
T  12018170 cgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcaactcaaaaa 12018243  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 9365490 - 9365434
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttca 114  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||    
T  9365490 tccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttca 9365434  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 7114901 - 7114984
Alignment:
Q  60 cgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaat 143  Q
    |||||||| ||||| |||||||||||| ||||| |||||||||| ||||| |||||||| ||||| ||  |||||||| |||||    
T  7114901 cgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

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Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 7612822 - 7612716
Alignment:
Q  27 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 126  Q
    ||||||||||  |||||||||||| ||||| |||||||||| ||||  || ||||| ||| ||||| |||| ||||| ||||||||||  || |||||||    
T  7612822 atcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacc 7612723  T
Q  127 tccaaaa 133  Q
    || ||||    
T  7612722 tcaaaaa 7612716  T

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Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 12005419 - 12005505
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatc 144  Q
    |||||||||| ||||| ||| |||| ||| ||||| ||||||||||||||||||||| ||| ||||| ||  ||||||| |||||||    
T  12005419 tccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttcatctaaaaaattctctcaatc 12005505  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 11986779 - 11986849
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 128  Q
    |||||||||| ||||| ||| |||| ||| ||||| |||| |||||||||||||||| ||| |||||||||    
T  11986779 tccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttcacctc 11986849  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 8578747 - 8578854
Alignment:
Q  26 tatcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcac 125  Q
    ||||||||| |  |||||||||||||||||  |||||||||| ||||  || |||||||||| |||| | || ||||| |||| ||||| ||||| | ||    
T  8578747 tatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattac 8578846  T
Q  126 ctccaaaa 133  Q
    ||| ||||    
T  8578847 ctcaaaaa 8578854  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 17565337 - 17565436
Alignment:
Q  27 atcctctctctgttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacc 126  Q
    ||||||||||  ||||| |||||||||||| ||||| |||| ||||| || ||||||||| |||   |||| ||||| || ||||||| ||| |||||||    
T  17565337 atcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttcacc 17565436  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 41965976 - 41966130
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 157  Q
    |||||||||| |||||||| |||||||||| |||| |||||||||| |||||||||||||| |||||||||  ||| ||||||||||| |||||||| ||    
T  41965976 tccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatcct 41966075  T
Q  158 tcgacacaactctgttttctaccaaatc---aacgatttctctaacctaaccacc 209  Q
    ||||| |||| ||| | |||||||  ||    | |||||||||||||||||||||    
T  41966076 tcgactcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 41966130  T

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Target: scaffold0667 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 5373 - 5250
Alignment:
Q  39 ttaccggtacaatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 138  Q
    ||||||||| |||| ||  |||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| | |||||||||    
T  5373 ttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccc 5274  T
Q  139 tcaatcgttccttaattcttcgac 162  Q
    ||||| | ||||| || |||||||    
T  5273 tcaatagatccttcatccttcgac 5250  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 37463417 - 37463293
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 157  Q
    |||||||||| ||||| |||||||||||| ||||  ||||||||||||||||||||||||| ||||| ||| ||||| |||||||||  ||| ||||  |    
T  37463417 tccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcat 37463318  T
Q  158 tcgacacaactctgttttctaccaa 182  Q
    |||| ||||||| | | ||||||||    
T  37463317 tcgaaacaactccgatatctaccaa 37463293  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 26575774 - 26575671
Alignment:
Q  58 tccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaattct 157  Q
    |||||||||| ||||| |||||||||||| ||| | ||||||||||  |||| |||||||| |||||||||  |||||||| |||||| |||||||| ||    
T  26575774 tccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatcct 26575675  T
Q  158 tcga 161  Q
    ||||    
T  26575674 tcga 26575671  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 36225655 - 36225575
Alignment:
Q  48 caatccctcatccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctc 128  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||  |||||||||| ||||||||||  || |||||||||    
T  36225655 caatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctc 36225575  T

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