View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499_low_1 (Length: 658)
Name: NF4499_low_1
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499_low_1 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Original strand, 8925575 - 8926058
Alignment:
| Q |
20 |
ttttaaacctaagaaagaaggtggagtggagttggatttaaattgttggcgtgttcaataaagccatgttggcaatgcaaatttggagattgcatgcatg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
8925575 |
ttttaaacctaagaaagaaggtggagtggagttggatttaaattgttggcgtgttcaataaagccatgttagcaatgcaaatttggagattgcattcata |
8925674 |
T |
|
| Q |
120 |
ttctaatactccacttgctagatgttataaggcaaagactttgtttagattgacggaattggatgggatggagtggagtcgagtggaatggtataaataa |
219 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
8925675 |
ttctactactccacatgctagatgttataaggcaaagactttgtttagattgacggaatcagatgggatggagtggagtcgagtggaatggtataaacaa |
8925774 |
T |
|
| Q |
220 |
agattccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattccatcctatactatcatctcgtcttatttttcattcc |
319 |
Q |
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|||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925775 |
agattccattgtttggatatgtaaaaattgaacagagtggaatggaacatggtggaatctattccatcctatactatcatctcgtcttatttttcattcc |
8925874 |
T |
|
| Q |
320 |
tccaaatttgcgaggtatacaatggaatgaaacaacttaattgatgaattgcnnnnnnnatccctattttcttgttccatcacatac-atgtcttttctc |
418 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
8925875 |
tcctaatctgcgaggtatacaatggaatgaaacaacttaattgatgaattgc-ttttttatccctattttcttgttccatcacatacaatgtcttttctc |
8925973 |
T |
|
| Q |
419 |
ct-cttcatgtattgtgttttacttctccaggttccttcttctcctcttcggcgtccctctcttgtgtttcttcttctaattcaa |
502 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8925974 |
ctccttcatgtattgtgttttacttctccaagttccttcttctcttcttcggcgtccctctcttgtgtttcttcttctaattcaa |
8926058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 562 - 648
Target Start/End: Original strand, 8926202 - 8926288
Alignment:
| Q |
562 |
gataaaatggttatttttatttgcccacttttaaaatctttcgtgttccaagattattcatatcacttatgattttagttccctttg |
648 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
8926202 |
gataaaattgttatttttatttggccacttttaaaatctttcgtgtgccaagattatttatatcacttatgattttagttccctttg |
8926288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 361
Target Start/End: Complemental strand, 35231934 - 35231796
Alignment:
| Q |
223 |
ttccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattccatcctatactatcatctcgtct-tatttttcattcctc |
321 |
Q |
| |
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||||||| |||| || | ||||||||| || | ||| |||||||||| ||||||| ||||||| | |||| | ||||| ||| ||||||||||||| | |
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| T |
35231934 |
ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattccattccataccaccatctt-tctctatttttcattcccc |
35231836 |
T |
|
| Q |
322 |
caaatttgcgaggtatacaatggaatgaaacaacttaatt |
361 |
Q |
| |
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| T |
35231835 |
ccaatttgggaggtatgcaatggaatagaaccacttaatt |
35231796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 185 - 354
Target Start/End: Original strand, 40961497 - 40961666
Alignment:
| Q |
185 |
ggatggagtggagtcgagtggaatggtataaataaagattccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattcc |
284 |
Q |
| |
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||||||| |||||| || | |||||||||||||| ||||||||| ||| |||| |||||||||||| |||| ||| ||| ||||||||||||||||| |
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| T |
40961497 |
ggatggaatggagtggaatagaatggtataaatacggattccattgtttggatatataaaaattgaatgtagtgaaatagaatatggtggaatctattcc |
40961596 |
T |
|
| Q |
285 |
atcctatactatcatctcgtcttatttttcattcctccaaatttgcgaggtatacaatggaatgaaacaa |
354 |
Q |
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||||||||| |||||||| |||| ||||||||||| | |||||| ||||||||| |||||||||||||| |
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| T |
40961597 |
atcctataccatcatctcctcttgtttttcattccctccaatttgggaggtatacgatggaatgaaacaa |
40961666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 203 - 485
Target Start/End: Original strand, 23473749 - 23474029
Alignment:
| Q |
203 |
tggaatggtataaataaagattccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattccatcctatactatcatctc |
302 |
Q |
| |
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|||||||||||| | || |||||||| ||| || |||||||||||||| | |||||||||||||| ||||||| ||||||||| |||| ||||||| |
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| T |
23473749 |
tggaatggtatagacaagaattccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatcccataccatcatcta |
23473848 |
T |
|
| Q |
303 |
gtcttatttttcattcctccaaatttgcgaggtatacaatggaatgaaacaacttaattgatgaattgcnnnnnnnatccctattttcttgttccatcac |
402 |
Q |
| |
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|||| ||||||||||| | |||||| ||||||||||||||||||| ||||||||||| || |||| | ||||||||||| | ||||||||| |
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| T |
23473849 |
ctcttgtttttcattccctccaatttgtgaggtatacaatggaatgatacaacttaattaattaattactttttt--tccctattttcgtattccatcac |
23473946 |
T |
|
| Q |
403 |
ata-catgtctt-ttctcct-cttcatgtattgtgttttacttctccaggttccttcttctcctcttcggcgtccctctcttgtgt |
485 |
Q |
| |
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||| |||||||| || |||| ||||||| ||||||| || |||||| |||| || |||| ||||| |||||||||||| ||||| |
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| T |
23473947 |
atatcatgtcttcttgtcctccttcatgcattgtgtcttgcttctcgaggt---tttttcttctctttggcgtccctctcgtgtgt |
23474029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 361
Target Start/End: Complemental strand, 35306878 - 35306740
Alignment:
| Q |
223 |
ttccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattccatcctatactatcatctcgtct-tatttttcattcctc |
321 |
Q |
| |
|
||||||| |||| || | ||||||||| || | ||| |||||||||| ||||||| ||||||| | |||| | ||||| ||| ||||||||||||| | |
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| T |
35306878 |
ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattccattccataccaccatctt-tctctatttttcattcccc |
35306780 |
T |
|
| Q |
322 |
caaatttgcgaggtatacaatggaatgaaacaacttaatt |
361 |
Q |
| |
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| |||||| ||||||| |||||||||| ||| |||||||| |
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| T |
35306779 |
ccaatttgggaggtatgcaatggaatggaaccacttaatt |
35306740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 50139649 - 50139556
Alignment:
| Q |
255 |
agtggaatggaacatggtggaatctattccatcctatactatcatctcgtcttatttttcattcctccaaatttgcgaggtatacaatggaatg |
348 |
Q |
| |
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|||||||||||| | | ||||||| |||||||||||||| | || || |||||||||| ||||| | |||||| || |||| |||||||||| |
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| T |
50139649 |
agtggaatggaataagatggaatccattccatcctataccaccacttcctcttattttttattccatccaatttgggatgtatgcaatggaatg |
50139556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 348
Target Start/End: Original strand, 29844247 - 29844373
Alignment:
| Q |
222 |
attccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattccatcctatactatcatctcgtcttatttttcattcctc |
321 |
Q |
| |
|
|||||||| ||| || ||||||| || ||| |||| ||||||| ||| ||||||| |||||||||||||| | || || ||||||||||||||| |
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|
| T |
29844247 |
attccattgtttggatttgtaaaattttaatggagtgaaatggaatatgatggaatccattccatcctataccaccacttcctcttatttttcattctat |
29844346 |
T |
|
| Q |
322 |
caaatttgcgaggtatacaatggaatg |
348 |
Q |
| |
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| |||||| ||||||| |||||||||| |
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| T |
29844347 |
ccaatttgggaggtatgcaatggaatg |
29844373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 31151722 - 31151784
Alignment:
| Q |
222 |
attccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattcc |
284 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||| | ||||||||||||| ||||||| ||||| |
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|
| T |
31151722 |
attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaatccattcc |
31151784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 347
Target Start/End: Complemental strand, 9340 - 9216
Alignment:
| Q |
222 |
attccattatttaaatatgtaaaaattgaataaagtggaatggaacatggtggaatctattccatcctatactatcatctcgtcttatttttcattcctc |
321 |
Q |
| |
|
|||||||| ||| ||| ||||||| || ||| |||||||| ||| ||| ||||||| |||||||||||| | | || || ||||| |||||||||| |
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| T |
9340 |
attccattgtttgaatttgtaaaattttaatggagtggaattgaatatgatggaatccattccatcctatgccaccacttcctctta-ttttcattccat |
9242 |
T |
|
| Q |
322 |
caaatttgcgaggtatacaatggaat |
347 |
Q |
| |
|
| |||||| ||||||| ||||||||| |
|
|
| T |
9241 |
ccaatttgggaggtatgcaatggaat |
9216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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