View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4499_low_2 (Length: 655)

Name: NF4499_low_2
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4499_low_2
NF4499_low_2
[»] chr6 (5 HSPs)
chr6 (277-655)||(11947110-11947482)
chr6 (277-587)||(17716039-17716342)
chr6 (280-587)||(14667094-14667393)
chr6 (582-655)||(14666969-14667042)
chr6 (582-622)||(17715947-17715987)
[»] chr8 (6 HSPs)
chr8 (280-587)||(45349687-45349985)
chr8 (467-655)||(28245033-28245221)
chr8 (277-443)||(28245251-28245417)
chr8 (461-587)||(17630113-17630239)
chr8 (582-655)||(45349562-45349635)
chr8 (582-655)||(17629985-17630061)
[»] chr7 (1 HSPs)
chr7 (337-655)||(9238395-9238704)
[»] chr3 (7 HSPs)
chr3 (18-201)||(27832624-27832807)
chr3 (467-652)||(13851786-13851971)
chr3 (277-443)||(1658097-1658263)
chr3 (461-587)||(1658290-1658412)
chr3 (54-206)||(27827691-27827839)
chr3 (583-655)||(1658465-1658537)
chr3 (132-212)||(27845227-27845306)
[»] chr5 (6 HSPs)
chr5 (277-587)||(24046487-24046791)
chr5 (277-443)||(23758815-23758981)
chr5 (277-443)||(23824275-23824441)
chr5 (277-443)||(23758226-23758392)
chr5 (277-443)||(23823682-23823849)
chr5 (582-655)||(24046843-24046916)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 277 - 655
Target Start/End: Complemental strand, 11947482 - 11947110
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947482 ttcttattctttggcaacatctaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 11947383  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnngcactgatctaagata 476  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                 ||||  ||||||||||    
T  11947382 aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag-----gaaaaaaaaaaagcacgaatctaagata 11947288  T
Q  477 attgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaa 576  Q
    ||||  || |||| | ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947287 attgcgatgaaatct-agcgaaatcaaaaccgaatgcgcgaaaaatgccaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaa 11947189  T
Q  577 ggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 655  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  11947188 ggatttgtgaagctcgattggtgaagtgtgaagcttgacggtgagattcagttccgtgagaagctcaacggaatgagaa 11947110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 277 - 587
Target Start/End: Complemental strand, 17716342 - 17716039
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17716342 ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 17716243  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnngcactgatctaagata 476  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||                 |||| |||||||||||    
T  17716242 aaattaaacacatagaatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataacag-------aaaaataaaagcacggatctaagata 17716150  T
Q  477 attgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaa 576  Q
    ||||  || |||| ||||||||||||||||| || || | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17716149 attgcgatgaaatctaagcgaaatcaaaaccgaaagcgcaaaaaatgtgaaatcgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaa 17716050  T
Q  577 ggatttgtgaa 587  Q
    |||||||||||    
T  17716049 ggatttgtgaa 17716039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 280 - 587
Target Start/End: Complemental strand, 14667393 - 14667094
Alignment:
Q  280 ttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa 379  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14667393 ttattctttggcaacatcaaagacatgaatttcaaagaaattataaatcacaaatgccaaacagaataagaagaatttgagttaaattgtgaaacgaaaa 14667294  T
Q  380 tcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnngcactgatctaagataatt 479  Q
    | |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||                 |||| ||||||||||||||    
T  14667293 ttaaacacgtagaatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataacag--------aaaaaaaaagcacggatctaagataatt 14667202  T
Q  480 gttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagga 579  Q
    |  || |||| ||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667201 gcgatgaaatctaagcaaaatcaataccgaaagcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagga 14667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 582 - 655
Target Start/End: Complemental strand, 14667042 - 14666969
Alignment:
Q  582 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 655  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  14667042 tgtgaagctcgatcgatgacgtgtgaagctcgacggtgagattcagttcggtgagaagctcgacagaatgagaa 14666969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 582 - 622
Target Start/End: Complemental strand, 17715987 - 17715947
Alignment:
Q  582 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgaga 622  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17715987 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgaga 17715947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 280 - 587
Target Start/End: Complemental strand, 45349985 - 45349687
Alignment:
Q  280 ttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa 379  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45349985 ttattctttggcaacatcaaacacatgaatttaaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacgaaaa 45349886  T
Q  380 tcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnngcactgatctaagataatt 479  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||                 |||| ||||||||||||||    
T  45349885 ttaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag---------aaaaaaaagcacggatctaagataatt 45349795  T
Q  480 gttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagga 579  Q
    |  || |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45349794 gcgatgaaatctaagcgaaatcaaaaccgaatgcgcgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaagga 45349695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 467 - 655
Target Start/End: Complemental strand, 28245221 - 28245033
Alignment:
Q  467 atctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaa 566  Q
    ||||||||||||||  || |||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  28245221 atctaagataattgcgatgaaatctaagcgaaatcaaaaccgaatgcgcgaaaaatgggaaaccgaagaagaattcgagagttttacctgcgtgagcgaa 28245122  T
Q  567 agaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 655  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245121 agaggaaaaaggatttgtgaagctcgatcagtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 28245033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 277 - 443
Target Start/End: Complemental strand, 28245417 - 28245251
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245417 ttcttattctttggcaacatcaaacatatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 28245318  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 443  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28245317 aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag 28245251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 461 - 587
Target Start/End: Complemental strand, 17630239 - 17630113
Alignment:
Q  461 gcactgatctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtg 560  Q
    |||| |||| ||||||||||   | |||| ||||||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||| |||    
T  17630239 gcacggatcaaagataattgcggtgaaatctaagcgaaatcaaaaccgaaagcacgaaaaatgcgaaaaagaagaagaattcgagagtgttacctgtgtg 17630140  T
Q  561 agcgaaagaggaaaaaggatttgtgaa 587  Q
    |||||||| ||||||||||||||||||    
T  17630139 agcgaaaggggaaaaaggatttgtgaa 17630113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 582 - 655
Target Start/End: Complemental strand, 45349635 - 45349562
Alignment:
Q  582 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 655  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45349635 tgtgaagctcgattggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggcatgagaa 45349562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 582 - 655
Target Start/End: Complemental strand, 17630061 - 17629985
Alignment:
Q  582 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagtt---ccgtgagaagctcgacggaatgagaa 655  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||||   | |||||||||| |||||||||||||    
T  17630061 tgtgaagcttgatcggtgaagtgtgaagcttgacgttgagattcagttagacggtgagaagctggacggaatgagaa 17629985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 337 - 655
Target Start/End: Complemental strand, 9238704 - 9238395
Alignment:
Q  337 caaacagaacaagaagaatttgagttaaattgtgaaacgaaaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattc 436  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9238704 caaacagaacaagaagaatttgagttaaattgtgaaacgaaaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaa-agatgattc 9238606  T
Q  437 ataacagnnnnnnnnnnnnnnnnngcactgatctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaa 536  Q
    |||||||                 ||||  ||||||||||||||  || |||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  9238605 ataacaggaaaaaaaaaa------gcacgaatctaagataattgcgatgaaatctaagcgaaatcaaaaccgaatgcgcgaaaaatgcgaaaccgaagaa 9238512  T
Q  537 gaattcgagagtgttacctgcgtgagcgaaagaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgag 636  Q
    |||||||||  | |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  9238511 gaattcgag--ttttacctgcgtgagcgaaagaggaaaaaggatttgtgaagctctatccgtgaagtgtgaagctcgacggtgagattcagttccgtgag 9238414  T
Q  637 aagctcgacggaatgagaa 655  Q
    |||||||||||||||||||    
T  9238413 aagctcgacggaatgagaa 9238395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 3e-99; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27832807 - 27832624
Alignment:
Q  18 catacatcacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832807 catacatcacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcgga 27832708  T
Q  118 ccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832707 ccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc 27832624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 467 - 652
Target Start/End: Original strand, 13851786 - 13851971
Alignment:
Q  467 atctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaa 566  Q
    ||||||||||||||| || |||| ||||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13851786 atctaagataattgtgatgaaatctaagcgaaatcaaaactgaatgcgcgaaaaatgtgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaa 13851885  T
Q  567 agaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatga 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13851886 agaggaaaaaggatttgtgaagctcgatcggtgaagtgtgaagctcggcggtgagattcagttccgtgagaagctcgacggaatga 13851971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 277 - 443
Target Start/End: Original strand, 1658097 - 1658263
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1658097 ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 1658196  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 443  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  1658197 aaattaaacacatagaatttcaaaacaaaattcaaacaatgtgaacgaaatagatgactcataacag 1658263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 461 - 587
Target Start/End: Original strand, 1658290 - 1658412
Alignment:
Q  461 gcactgatctaagataattgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtg 560  Q
    |||| |||||||||||||||  || |||| |||||||||||||||  |||||| |||||||||||||||||||||||||||||||  |||||||||| ||    
T  1658290 gcacggatctaagataattgcgatgaaatctaagcgaaatcaaaa--aaatgcgcgaaaaatgcgaaaccgaagaagaattcgag--tgttacctgcttg 1658385  T
Q  561 agcgaaagaggaaaaaggatttgtgaa 587  Q
    |||||||||||||||||||||||||||    
T  1658386 agcgaaagaggaaaaaggatttgtgaa 1658412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 27827839 - 27827691
Alignment:
Q  54 aaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgc 153  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||    ||||| ||||||||||||||||||||||     
T  27827839 aaaaatgtaggtcgttaccaggccctaaaatcaaatcaaagatcatagagggcagacatgcggacct---aaaatttaattttcgtgcacacagcaatga 27827743  T
Q  154 ttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgttta 206  Q
    ||||||||||  ||   |||||| ||||||||||||||||||||||| |||||    
T  27827742 ttccttcatt-cttaattccagaccatcggcttattgtgcacgaatttgttta 27827691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 583 - 655
Target Start/End: Original strand, 1658465 - 1658537
Alignment:
Q  583 gtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 655  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1658465 gtgaagctcgatcggtgaagtatgaagctcgacggtgagattcagttccgtgagaagctcgacagaatgagaa 1658537  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 27845306 - 27845227
Alignment:
Q  132 attttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgtttataattc 212  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||  |||| ||||||||||    
T  27845306 attttcgtgcacacaacaatgcttccttcattgtttt-attcagagcatcgacttattgtgcacatattcatttataattc 27845227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 277 - 587
Target Start/End: Original strand, 24046487 - 24046791
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24046487 ttcttattctttggcaacatcaaacacatgaatttcaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 24046586  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacagnnnnnnnnnnnnnnnnngcactgatctaagata 476  Q
    |||| |||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||| |                 ||||  ||||||||||    
T  24046587 aaattaaacacataacatttcaaaacaaaaatcaaacaatgtgaacgaaatagatgattcataactg------aaaaaaaaaaagcacgaatctaagata 24046680  T
Q  477 attgttataaaatttaagcgaaatcaaaaccaaatgcacgaaaaatgcgaaaccgaagaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaa 576  Q
    ||||  || |||| |||||||||| |||| | || ||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24046681 attgcgatgaaatctaagcgaaataaaaaacgaaggcgtgaaaaatgcgaaaccgaaaaagaattcgagagtgttacctgcgtgagcgaaagaggaaaaa 24046780  T
Q  577 ggatttgtgaa 587  Q
    |||||| ||||    
T  24046781 ggatttatgaa 24046791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 277 - 443
Target Start/End: Complemental strand, 23758981 - 23758815
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23758981 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccgaacagaacaagaagaatttgagttaaattgtgaaacga 23758882  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 443  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  23758881 aaattaaacacatagaatatcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag 23758815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 277 - 443
Target Start/End: Complemental strand, 23824441 - 23824275
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23824441 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccgaacagaacaagaagaatttgagttaaattgtgaaacga 23824342  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 443  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  23824341 aaattaaacacatagaatatcaaaacaaaattcaaacaatgtgaacgaaatagatgattcataacag 23824275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 277 - 443
Target Start/End: Complemental strand, 23758392 - 23758226
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23758392 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacaa 23758293  T
Q  377 aaatcaaacacatagaatttcaaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 443  Q
    |||| |||||||||||||||||||| |||| | |||||||||||| |||||||||||||||||||||    
T  23758292 aaattaaacacatagaatttcaaaaaaaaaattaaacaatgtgaacgaaatagatgattcataacag 23758226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 277 - 443
Target Start/End: Complemental strand, 23823849 - 23823682
Alignment:
Q  277 ttcttattctttggcaacatcaaacacatgaattttaaagaaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacga 376  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23823849 ttcttattctttggcaacatcaaacacatgaatttcaaataaattataaatcacaaatgccaaacagaacaagaagaatttgagttaaattgtgaaacaa 23823750  T
Q  377 aaatcaaacacatagaatttc-aaaacaaaattcaaacaatgtgaatgaaatagatgattcataacag 443  Q
    |||| |||||||||||||||| |||| |||| | |||||||||||| |||||||||||||||||||||    
T  23823749 aaattaaacacatagaatttcaaaaaaaaaaattaaacaatgtgaacgaaatagatgattcataacag 23823682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 582 - 655
Target Start/End: Original strand, 24046843 - 24046916
Alignment:
Q  582 tgtgaagctcgatcggtgaagtgtgaagctcgacggtgagattcagttccgtgagaagctcgacggaatgagaa 655  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24046843 tgtgaagctcgatcggtgaagtgtgaagctcgatggtgagattcagttcggtgagaagctcgacggaatgagaa 24046916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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