View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4499_low_6 (Length: 338)
Name: NF4499_low_6
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 3968360 - 3968009
Alignment:
| Q |
1 |
ccgtcctaattgattctctaactcttgaaaatgagctttacccaaacatgggatattgagaggnnnnnnnngttaaaatggaataattaacagatgtttc |
100 |
Q |
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| T |
3968360 |
ccgtcctaattgattctctaactcttgaaaacgagctttacccaaacatgggatattgagatgaaaaaaaagttaacatggaataattaacagatgtttc |
3968261 |
T |
|
| Q |
101 |
tggtgacattggcaatcttgttttatatgcatcactcacccacgagcttaatttattcctccaattatgctttttacttatggtggatactcaaacttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3968260 |
tggtgacattggcaatcttgttttatatgcatcactcacccacgagcttaatttattcctccaattatgctttttacttatggtggatactcaaacttaa |
3968161 |
T |
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| Q |
201 |
agaacaagtgtgggagcaagacagtattggattaaactagaat---------------ggaaacgtggtccctagtgtgaaaatgagagtataattcaga |
285 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3968160 |
agaacaagtgtgtgagcaagacagtattggattaaactagaatggaaggtgccagaatggaaacgtggtccctagtgtgaaaatgagagtataattcaga |
3968061 |
T |
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| Q |
286 |
acttcagccatggatatgaaagataccaccaaaaacttgctatgagaattat |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3968060 |
acttcagccatggatatgaaagataccaccaaaaacttgctatgagaattat |
3968009 |
T |
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