View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4499_low_8 (Length: 233)
Name: NF4499_low_8
Description: NF4499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4499_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 5593335 - 5593141
Alignment:
| Q |
19 |
agattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5593335 |
agattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaacc |
5593236 |
T |
|
| Q |
119 |
ggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5593235 |
ggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttc |
5593141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 5587095 - 5586908
Alignment:
| Q |
23 |
tctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaa |
122 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||| | |||| ||| ||| ||||||||||| || || |||||||| |||||||||||||| |||| |
|
|
| T |
5587095 |
tctttatctgatagtggaaacaacaataaccttcctac---ctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaa |
5586999 |
T |
|
| Q |
123 |
gatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttc |
213 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586998 |
gatttaccaacggtcgaacttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttc |
5586908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 5576730 - 5576562
Alignment:
| Q |
19 |
agattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaacc |
118 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| | |||| ||| ||| |||||||| ||||| || || ||||||||||||||||||||| |
|
|
| T |
5576730 |
agattctttatctgatagtggaaacaataacaaccttcccac---ctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaacc |
5576634 |
T |
|
| Q |
119 |
ggaagatttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga |
189 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||| | || |||||||| ||||||||| |
|
|
| T |
5576633 |
ggaagatttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
5576562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 5573568 - 5573414
Alignment:
| Q |
19 |
agattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaacc |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| | |||| ||| ||| |||||||| ||||| || || ||||| |||||||| |||||| |
|
|
| T |
5573568 |
agattctttatctgatagtggaaacaacaataaccttcctac---ctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaacc |
5573472 |
T |
|
| Q |
119 |
ggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt |
176 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
5573471 |
ggaagatttaccaacggtagaactgcaattgacataataagtaacattctttcaactt |
5573414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
78 |
attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
170 |
Q |
| |
|
||||||| ||||| || || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
120 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat |
187 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| | ||||||| |
|
|
| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 12051887 - 12051943
Alignment:
| Q |
114 |
caaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
170 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
12051887 |
caaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
130 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
190 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
|
|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University