View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4500-Insertion-3 (Length: 723)
Name: NF4500-Insertion-3
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500-Insertion-3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 3 - 723
Target Start/End: Complemental strand, 2017435 - 2016716
Alignment:
| Q |
3 |
caacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctg |
102 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017435 |
caacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
2017336 |
T |
|
| Q |
103 |
cgacgaaaagagcatacgggtgaaccaatcattttggggtatcagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgt |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2017335 |
cgacgaaaagagcatacaggtgaaccaatcattttggggtatcagaatgacacattttcccgtctcatcaacacgaaacaagtttgttgccgttggctgt |
2017236 |
T |
|
| Q |
203 |
gacacgattgcaatacccgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatg |
302 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017235 |
gacacgattgcaatactcgcagcatttgattttgggggaaacaactacaccacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatg |
2017136 |
T |
|
| Q |
303 |
aatcttgctccggcactggttgttgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgttactgtaggtgcattcaacaatcactc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017135 |
aatcttgctccggcactggttgttgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgttactgtaggtgcattcaacaatcactc |
2017036 |
T |
|
| Q |
403 |
agcagtacatgacttcaatccttgtggttatgcnnnnnnnngttgaaaatggagcctgcactttcgaatccacggacctcctcaagttggagaagaagga |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017035 |
agcagtacatgacttcaatccttgtggttatgc-tttttttgttgaaaatggagcctacactttcgaatccacggacctcctcaagttggagaagaagga |
2016937 |
T |
|
| Q |
503 |
atttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtacatgt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2016936 |
atttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttgcaaattatgcctgtaaggacaacaaaagtacatgt |
2016837 |
T |
|
| Q |
603 |
tacaatccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatatatttct |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2016836 |
tacaatccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatatatttct |
2016737 |
T |
|
| Q |
703 |
tttctcttcttatttggatca |
723 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2016736 |
tttctcttcttatttggatca |
2016716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 31 - 703
Target Start/End: Original strand, 40566267 - 40566938
Alignment:
| Q |
31 |
taatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctgcgacgaaaagagcatacgggtgaaccaa |
130 |
Q |
| |
|
|||||||| ||||||||| ||||| || |||||||| ||| |||||||||||||||||||||||||||| || |||||| ||| | | ||||| |
|
|
| T |
40566267 |
taatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgctacgcagaaaagggcagattcatataccaa |
40566366 |
T |
|
| Q |
131 |
tcattttggggtatcagaatgacacatcttcccgtctcatcaacacgaaacaagttttttgccgttggctgtgacacgattgcaatacccgcagcatttg |
230 |
Q |
| |
|
| | ||| ||| | ||||||||| || | |||| |||| ||||||||||| || ||||||||||||||||||| | || | | || ||| |
|
|
| T |
40566367 |
acgctgcgggatatgaacatgacacatttttacatctcgccaactcgaaacaagttgacagcagttggctgtgacacgattggagcactctcggcgattg |
40566466 |
T |
|
| Q |
231 |
attttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtca |
330 |
Q |
| |
|
||| |||||||||||||||||| || |||||| ||||||| ||||||||| || ||||||| |||||| | |||||||||| || ||||||||||| | |
|
|
| T |
40566467 |
attctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatattatggccagtcaatcttgctcaggtactggttgttgcga |
40566566 |
T |
|
| Q |
331 |
gatttcaataccgcaaggtcatttgttcgaga-aagtgtcctttgttactgtaggtgcattcaacaatcactcagcagtacatgacttcaatccttgtgg |
429 |
Q |
| |
|
|||||||||||| ||||||| | |||| |||| ||||| ||| | | ||| |||| ||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
40566567 |
gatttcaataccccaaggtcgtgtgtt-gagagaagtggcctatacttctgcaggtatattcaacaatcactcagacgtacatgatttcaatccctgtgg |
40566665 |
T |
|
| Q |
430 |
ttatgcnnnnnnnngttgaaaatggagcctgcactttcgaatccacggacctcctcaagttggagaagaaggaatttcctgtgttgttggactgggcagt |
529 |
Q |
| |
|
|||| | |||||||||||||||| || ||||||||||| |||||||| |||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
40566666 |
ttattcttttgtg-gttgaaaatggagcctacagcttcgaatccacagacctccttgagttaaagaagaaggagtttcctgtgttgttcgactgggcagt |
40566764 |
T |
|
| Q |
530 |
agggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtacatgttacaatccacctgagaaatctggttac |
629 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||| | |||||||| ||||||| || ||||||||||||||||||| || | |||| |||||| ||| |
|
|
| T |
40566765 |
agggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttacaattcagccgagagatctggctac |
40566864 |
T |
|
| Q |
630 |
ctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatatatttctt |
703 |
Q |
| |
|
||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
40566865 |
ctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatatatatctt |
40566938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 482 - 700
Target Start/End: Original strand, 40600732 - 40600953
Alignment:
| Q |
482 |
cctcaagttggagaagaaggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgt |
581 |
Q |
| |
|
|||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | | |||||| ||| |
|
|
| T |
40600732 |
cctcaagttgaataacaaggagtttcctgtgttgttggactgggcagtagggaaccaaacttgtcatcaagctcagaaggatctttccacttatgcgtgt |
40600831 |
T |
|
| Q |
582 |
aaggacaacaaaagtacatgttacaat---ccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatg |
678 |
Q |
| |
|
|||| | ||||||||||||||||| || || |||| | ||||||||||||||| |||||| |||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
40600832 |
aaggccgacaaaagtacatgttacgatgcaacaactgacagatctggttacctttgtagatgctctcatggatatcggggaaatccttatctcgttcatg |
40600931 |
T |
|
| Q |
679 |
gttgccaaggtatcatatattt |
700 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
40600932 |
gttgccaaggtattatatattt |
40600953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 397 - 712
Target Start/End: Original strand, 40589606 - 40589927
Alignment:
| Q |
397 |
tcactcagcagtacatgacttcaatccttgtggttatgcnnnnnnnngttgaaaatggagcctgcactttcgaatccacggacctcctcaagttggagaa |
496 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| ||||||||||||| || || ||||| | |||| ||||||| |||| | |||| |
|
|
| T |
40589606 |
tcactcagcagtatatgacttcaatccgtgtggttatg-tttttattgttgaaaatggagactacattttcgcaaccacagacctccccaagctaaagaa |
40589704 |
T |
|
| Q |
497 |
gaaggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaat---tatgcctgtaaggacaacaaa |
593 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||| | ||||| ||||||| ||| | |
|
|
| T |
40589705 |
gaagaactttcctgtgttgttggactgggcagtaggaaaccaaacctgtcagcaagctcagaaggatctttcaagtaagtatgcttgtaaggcagacaga |
40589804 |
T |
|
| Q |
594 |
agtacatgttacaatccac---ctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggta |
690 |
Q |
| |
|
|||| ||||||| || || | ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40589805 |
agtatatgttacgatgcagaaaccatcaaatctggttacctttgcaaatgctttgatggatataggggaaatccttacctcattcatggttgcgaaggta |
40589904 |
T |
|
| Q |
691 |
tcatatatttcttt-tctcttct |
712 |
Q |
| |
|
|||| ||||| ||| |||||||| |
|
|
| T |
40589905 |
tcatgtatttttttatctcttct |
40589927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 477 - 698
Target Start/End: Original strand, 40571408 - 40571632
Alignment:
| Q |
477 |
gacctcctcaagttggagaagaaggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatg |
576 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||| ||||| ||||||| |
|
|
| T |
40571408 |
gacctcctcaagttgaagaataaggagtttcctgtgttgttgaactggacagtaggaaaccaaacatgcctgcaagctcagaagaatcttttcaattatg |
40571507 |
T |
|
| Q |
577 |
cctgtaaggacaacaaaagtacatgttacaatcc---acctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcat |
673 |
Q |
| |
|
| ||||||| | | ||||||||||||||| |||| | | | |||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
40571508 |
catgtaaggccgagaaaagtacatgttacgatccaggaaccaacaaatctggttacctttgcagatgctttggtggatatcggggaaatccttacctcat |
40571607 |
T |
|
| Q |
674 |
tcatggttgccaaggtatcatatat |
698 |
Q |
| |
|
| |||||||| ||||||| |||||| |
|
|
| T |
40571608 |
taatggttgcgaaggtattatatat |
40571632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 494 - 710
Target Start/End: Original strand, 40577848 - 40578067
Alignment:
| Q |
494 |
gaagaaggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaa |
593 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| || ||||| |||| ||||||||||||| ||| | | |||||||| ||||||| || ||| |
|
|
| T |
40577848 |
gaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaa |
40577947 |
T |
|
| Q |
594 |
agtacatgttacaatccac---ctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggta |
690 |
Q |
| |
|
|||||||||||| | || | | |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40577948 |
agtacatgttacgaaacaggaaccaacaaatctggttacctttgcagatgctctcatggatatcggggaaatccttacctcattaatggttgccaaggta |
40578047 |
T |
|
| Q |
691 |
tcatatatttcttttctctt |
710 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
40578048 |
ttatatattttttttctctt |
40578067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 504 - 691
Target Start/End: Original strand, 40596122 - 40596312
Alignment:
| Q |
504 |
tttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtacatgtt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | |||||| ||||||| ||||||||| ||||| |
|
|
| T |
40596122 |
tttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcggaaggatctttccacttatgcatgtaaggcagacaaaagtaaatgtt |
40596221 |
T |
|
| Q |
604 |
acaat---ccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtat |
691 |
Q |
| |
|
| || ||| || | |||||||||||||| ||||||||| |||||||| |||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
40596222 |
atgatgcaccaactcacaaatctggttacctctgcagatgcagggatggatattggggtaatccttacctcaaccatggctgccaaggtat |
40596312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 40595875 - 40595958
Alignment:
| Q |
259 |
atgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaatacc |
342 |
Q |
| |
|
|||| |||| |||||||||||| ||| |||||| ||||||||||||||||| |||||| | ||||||||| ||||||||||||| |
|
|
| T |
40595875 |
atgtgtggccttgtgcaacaggcttagtgatattgtggccaatgaatcttgttccggcccaggttgttgtgagatttcaatacc |
40595958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 40570935 - 40571024
Alignment:
| Q |
12 |
tacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgct |
101 |
Q |
| |
|
|||| ||| ||||||| |||||||||| ||| ||||||||||| || || ||||||||||||| ||||||||||||||| || ||||||| |
|
|
| T |
40570935 |
taccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgattgct |
40571024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 40577358 - 40577447
Alignment:
| Q |
12 |
tacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgct |
101 |
Q |
| |
|
|||| ||| ||||||| |||||||||| ||| ||||||||||| ||| |||||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
40577358 |
taccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctattgct |
40577447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 40595654 - 40595718
Alignment:
| Q |
29 |
actaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccag |
93 |
Q |
| |
|
||||||||| |||| |||| || || ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
40595654 |
actaatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccag |
40595718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 350
Target Start/End: Original strand, 40589451 - 40589562
Alignment:
| Q |
239 |
ggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcgtggccaatgaatcttgctccggcactggttgttgtcagatttcaa |
338 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||| |||| |||| |||||||| ||||| || || |||||||||| |||||||| |
|
|
| T |
40589451 |
ggaaacaactacacctctggatgtttggcttggtgcaacaggcacgctgatctcgttgccaatgagtcttgttctggtcctggttgttgccagatttcgg |
40589550 |
T |
|
| Q |
339 |
taccgcaaggtc |
350 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
40589551 |
taccccaaggtc |
40589562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 8490602 - 8490691
Alignment:
| Q |
12 |
tacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgct |
101 |
Q |
| |
|
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|
| T |
8490602 |
taccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgct |
8490691 |
T |
|
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