View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_high_10 (Length: 307)
Name: NF4500_high_10
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 12008760 - 12008486
Alignment:
| Q |
1 |
atgggcaaaagacacagcagcatcttatacaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaacgacgac |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12008760 |
atgggcaaaagacacagcaacatcttatacaattgtgggaacactcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaatgacgac |
12008661 |
T |
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| Q |
101 |
aaaactggtttgcccatcttcttgcatgacaacatatttactgcatttctcttagcagacgcaatatctctcttcacatctgccacttctgtattgattt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||| ||||||||||| ||||||| ||||| || ||||||| |
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| T |
12008660 |
aaaactggtttgcccatcttcttacatgacaacatattcactgcatttctcatggcagacgcagtatctctcttcgcatctgcaacttccgtcttgattt |
12008561 |
T |
|
| Q |
201 |
tcattgggattctcacgtcgcgttatgctgagaaagactttctcaagagcttgccttggaagttaatgttaggtc |
275 |
Q |
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||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
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| T |
12008560 |
tcattggaatactcacatcgcgttatgctgagaaggactttctcaagagcttgccttggaagttattgttcggtc |
12008486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 11919327 - 11919058
Alignment:
| Q |
1 |
atgggcaaaagacacagcagcatcttatacaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaacgacgac |
100 |
Q |
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|||||||||||| |||||| |||||| |||||||| |||||||| ||||||||| |||||||||| ||||| ||||| ||||| || |||||| | | |
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| T |
11919327 |
atgggcaaaagagacagcaacatctttcacaattgtaggtactcttatcactaccgtcatgtttgccgcagcatttacagtcccgggcggaaacaatcaa |
11919228 |
T |
|
| Q |
101 |
aaaactggtttgcccatcttcttgcatgacaacatatttactgcatttctcttagcagacgcaatatctctcttcacatctgccacttctgtattgattt |
200 |
Q |
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| T |
11919227 |
gataccggtttgcccatcttcttgaatgacagcgtattcactacatttctcatggcagacgcattatctctcttcacatcggccacttctgtgttgattt |
11919128 |
T |
|
| Q |
201 |
tcattgggattctcacgtcgcgttatgctgagaaagactttctcaagagcttgccttggaagttaatgtt |
270 |
Q |
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|||| || ||||| || || |||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
11919127 |
tcataggaattctaacatctcgttatgctgagaaagacttcctcaagagcttgccttggaagttattgtt |
11919058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 11754504 - 11754411
Alignment:
| Q |
1 |
atgggcaaaagacacagcagcatcttatacaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaac |
94 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||| |||||| ||| || ||||| |||||||||||||||||||| || || ||||| ||||||||| |
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| T |
11754504 |
atgggcaaaagagacagcagaatcatttacacttgtggctacacttatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaac |
11754411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 11790645 - 11790552
Alignment:
| Q |
1 |
atgggcaaaagacacagcagcatcttatacaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaac |
94 |
Q |
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|
|||||||||||| ||||||| || | |||| |||| | |||||||||||| |||||||||||||||||||| || || ||||| ||||||||| |
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| T |
11790645 |
atgggcaaaagaaacagcaggttcatttacacttgttgctactctcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaac |
11790552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11748092 - 11748322
Alignment:
| Q |
1 |
atgggcaaaagacacagcagcatcttatacaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaacgacgac |
100 |
Q |
| |
|
|||||||||||| ||||| | || | |||| |||| | ||| |||||||| ||||||||||| |||||||| || || ||||| ||||||||| | | |
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| T |
11748092 |
atgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatcaa |
11748191 |
T |
|
| Q |
101 |
aaaactggtttgcccatcttcttgcatgacaacatatttactgcatttctcttagcagacgcaatatctctcttcacatctgccacttctgtattgattt |
200 |
Q |
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| | ||| | ||| |||||||||||||||| | ||||| || ||| | ||||||| ||||||||||| ||||| ||| | ||||| || | | | |
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| T |
11748192 |
gacagtggaattcccctcttcttgcatgacaatacatttaatgtgtttataatagcagatgcaatatctcttttcacttcttcaacttcagtccttctct |
11748291 |
T |
|
| Q |
201 |
tcattgggattctcacgtcgcgttatgctga |
231 |
Q |
| |
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||||||| |||||||| ||||||||||||| |
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| T |
11748292 |
tcattggaattctcacagcgcgttatgctga |
11748322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 11834862 - 11834769
Alignment:
| Q |
1 |
atgggcaaaagacacagcagcatcttatacaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaac |
94 |
Q |
| |
|
|||||||||||| ||||| | || | |||| |||| | ||| |||||||| |||||||||||||||||||| || || ||||| ||||||||| |
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| T |
11834862 |
atgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaac |
11834769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 11751364 - 11751312
Alignment:
| Q |
41 |
actctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaa |
93 |
Q |
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|||||||||||||| ||||||||||||||||| || || ||||| |||||||| |
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| T |
11751364 |
actctcatcactactatcatgtttgctgcagctttcacagtccctggtggaaa |
11751312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 11882431 - 11882381
Alignment:
| Q |
44 |
ctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaac |
94 |
Q |
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|
|||||||| |||||||||||||||||||| || || ||||| ||||||||| |
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| T |
11882431 |
ctcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaac |
11882381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 6106110 - 6106175
Alignment:
| Q |
29 |
acaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaac |
94 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| || || || ||||| |||||| |
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|
| T |
6106110 |
acaattgtgggtactctcatcattaccatcatgtttgctgcagctttcactgttccaggaggaaac |
6106175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6129821 - 6129756
Alignment:
| Q |
1 |
atgggcaaaagacacagcagcatcttatacaattgtgggtactctcatcactaccatcatgtttgc |
66 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||| |||||||| |||| ||||||||||||||| |
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|
| T |
6129821 |
atgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgc |
6129756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 6858714 - 6858649
Alignment:
| Q |
29 |
acaattgtgggtactctcatcactaccatcatgtttgctgcagcctttacggtcccaggtggaaac |
94 |
Q |
| |
|
|||||| |||||||||| || | ||||||||||||||||||||| || || || ||||| |||||| |
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|
| T |
6858714 |
acaattatgggtactcttattattaccatcatgtttgctgcagctttcactgttccaggaggaaac |
6858649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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