View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_high_11 (Length: 305)
Name: NF4500_high_11
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 43985121 - 43985417
Alignment:
| Q |
9 |
agcaaaggcataagtgtaacatccttagcaagaacaccagcaacatccacaccaccattaacacatagagacaacaatatcgaaacacaatgttcctttg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43985121 |
agcaaaggcataagtgtaacatccttagcaagaacaccagcaacatcaacaccaccattaacacatagagacaacaatatcgaaacacaatgttcctttg |
43985220 |
T |
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| Q |
109 |
cagcacgcgaaggagcagatcgcaacagcccagcaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctcagcaagtgccgc |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43985221 |
cagcacgcgaaggagcagatcgcaacagcccagtaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctcagcaagtgccgc |
43985320 |
T |
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| Q |
209 |
aagaacagccaaagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaagcacacgt |
305 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43985321 |
aagaacagccagagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaagcacacgt |
43985417 |
T |
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