View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_high_2 (Length: 356)
Name: NF4500_high_2
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 151 - 340
Target Start/End: Complemental strand, 13604611 - 13604422
Alignment:
| Q |
151 |
ccactaatcgatcattnnnnnnncatgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaggttccacttcatactggtgcaccatg |
250 |
Q |
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| T |
13604611 |
ccactaatcgatcattaaaaaaacatgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaagttccacttcatactggtgcaccatg |
13604512 |
T |
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| Q |
251 |
ttcttctcacaaaaccaacaaatatctccaatcaaaaagggaaacgataaaaaagactcacccaatatttgcattgttgaacacgttctc |
340 |
Q |
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| T |
13604511 |
ttcttctcacaaaaccaacaaatatctccaatcaaaaagggaaacgataaaaaagactcacccaatatttgcattgttgaacacgttctc |
13604422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 13604757 - 13604680
Alignment:
| Q |
5 |
tcttctctcttgcatcaccccaatataccttagccaccacagtcacctatacacaattcgacttaagtcaaacctcaa |
82 |
Q |
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| T |
13604757 |
tcttctctcttgcatcaccccaatataccttagccaccacagtcacctatacacaattcgacttaagtcaaacctcaa |
13604680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 24269834 - 24269923
Alignment:
| Q |
176 |
tgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaggttccacttcatactggtgcaccatgttcttctcacaaaac |
265 |
Q |
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| T |
24269834 |
tgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcaccacgttcttctcacgaaac |
24269923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 24269683 - 24269758
Alignment:
| Q |
7 |
ttctctcttgcatcaccccaatataccttagccaccacagtcacctatacacaattcgacttaagtcaaacctcaa |
82 |
Q |
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|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24269683 |
ttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaacttaagtcaaacctcaa |
24269758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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