View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_high_3 (Length: 351)
Name: NF4500_high_3
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_high_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 86 - 351
Target Start/End: Complemental strand, 10386234 - 10385967
Alignment:
| Q |
86 |
tatttgaaactatgtttgattttaagtaaacttagnnnnnnn-aactatgttt-gattaaatgcactaaacgaaattgcgccaagtgttttttgtggtta |
183 |
Q |
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| T |
10386234 |
tatttgaaactatgtttgattttaagtaaacttagttttttttaactatgttttgattaaatgcactgaacgaaattgcgccaagtgttttttttggtta |
10386135 |
T |
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| Q |
184 |
aattgtgttgttatctgtctctaaagtagataagggaagacgacaatnnnnnnnttcaaagttttcaaaacacatactattatttcctattgtcagtgta |
283 |
Q |
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| T |
10386134 |
aattgtgttgttatttgtttctaaagtagataagggaagacgacagtaaaaaaattcaaagttttcaaaacacatactattatttcctattgtcaatgta |
10386035 |
T |
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| Q |
284 |
ctctctcttttacagtaagcttaaataagttgtgatttggtggaattacctactctgcttgcatattt |
351 |
Q |
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| T |
10386034 |
ctctctcttttacagtaagcttaaataagttgtgatttggtggaattacctactctgcttgcatattt |
10385967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 10386397 - 10386238
Alignment:
| Q |
10 |
tatcataggtataaaactcaaccccaaacttcacagtcaatatgaaacgccatttgattaaaaatttctacaaccatatttgaaactatgtttgatttta |
109 |
Q |
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| T |
10386397 |
tatcataggtataaaactcaaccccaaacttcac-gtcaatatgaa--------tgattaaaaatttctacaaccatatttgaaactatgtttgatttta |
10386307 |
T |
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| Q |
110 |
agtaaacttag--nnnnnnnaactatgtttgattaaatgcactaaacgaaattgcgccaagtgtttttt |
176 |
Q |
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| T |
10386306 |
agtaaacttagtttttttttaattatgtttgattaaatgcactgaatgaaattgcgccaagggtttttt |
10386238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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