View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_high_4 (Length: 345)
Name: NF4500_high_4
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 282
Target Start/End: Original strand, 39690069 - 39690330
Alignment:
| Q |
2 |
cggagtaactagcattactcaatattattgcaaaagcgcatccgttcaattcatgagagtaactagcattactcaatattattacaaatagacaatatat |
101 |
Q |
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| T |
39690069 |
cggagtaaccagcattactcaatattattgcaaaagcgcattcgttcaattcatgagagtaactagcattactcaatattattacaaatagacaatatat |
39690168 |
T |
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| Q |
102 |
taaaatgtnnnnnnnnnnnnnnnnnnnntagaactagattcattatcaggcgaaggagaatttcgaggcaattgtgttggagcaacacttgatgaggaag |
201 |
Q |
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| T |
39690169 |
taaaa-gtatcatcatcatcatcctcattagaactagattcattatcaggcgaaggagaatttcgaggcaattgtgttgg------------------ag |
39690249 |
T |
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| Q |
202 |
cattccaagcaggtggttgtactgaggagcgtgccggagcagtccagataatatcacttggtgggggagcattccaagtcg |
282 |
Q |
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| T |
39690250 |
cattccaagcaggtggttgtactggggagcgtgccggagcagtccagataatatcacttggtgggggagcattccaagtcg |
39690330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 279
Target Start/End: Complemental strand, 39705112 - 39704969
Alignment:
| Q |
136 |
tagattcattatcaggcgaaggagaatttcgaggcaattgtgttggagcaacacttgatgaggaagcattccaagcaggtggttgtactgaggagcgtgc |
235 |
Q |
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| T |
39705112 |
tagattcattattgggtgaaggagcatttcgaggcgattgtgttggagcagcacttgacgagggagcattccaagctggcgattgtactggggagtgtgc |
39705013 |
T |
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| Q |
236 |
cggagcagtccagataatatcacttggtgggggagcattccaag |
279 |
Q |
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| T |
39705012 |
cggagcagtccagacaatagcacttggtgagggagcattccaag |
39704969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 39705248 - 39705145
Alignment:
| Q |
3 |
ggagtaactagcattactcaatattattgcaaaagcgcatccgttcaattcatgagagtaactagcattactcaatattattacaaatagacaatatatt |
102 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |
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| T |
39705248 |
ggagtaactagcattactcgatattattacaaaagcgcattcgttcaattcatgagagtaactaccattactcaatattattacatatagacaatagatt |
39705149 |
T |
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| Q |
103 |
aaaa |
106 |
Q |
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|||| |
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| T |
39705148 |
aaaa |
39705145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 39704886 - 39704822
Alignment:
| Q |
179 |
tggagcaacacttgatgaggaagcattccaagcaggtggttgtactgaggagcgtgccggagcag |
243 |
Q |
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| T |
39704886 |
tggagcaacacttgatgagggagcattccaagccggtggttgtgttggggagcgtgccggagcag |
39704822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 39704947 - 39704888
Alignment:
| Q |
175 |
gtgttggagcaacacttgatgaggaagcattccaagcaggtggttgtactgaggagcgtg |
234 |
Q |
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| T |
39704947 |
gtgttggagcaacacttgatgagggagcattccaagctggtggttgtgttggggagcgtg |
39704888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 39690361 - 39690417
Alignment:
| Q |
187 |
cacttgatgaggaagcattccaagcaggtggttgtactgaggagcgtgccggagcag |
243 |
Q |
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| T |
39690361 |
cacttggtgaggaagcattccaagtcggtggttgtgttggggagcgcgccggagcag |
39690417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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