View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_high_6 (Length: 340)
Name: NF4500_high_6
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 35130504 - 35130252
Alignment:
| Q |
2 |
agctagacacctcattaacattaatattgaagtacttgtaatgtatgataaaattattggtggtttctctatttttgctgacatctaaatgattgttata |
101 |
Q |
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| T |
35130504 |
agctagacacctcattaacattaatattgaagtacttgtaatgtatgataaaattattggtggtttctctatttttgctgacatctaaatgattgttata |
35130405 |
T |
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| Q |
102 |
cttttccaacatattcaaagatatg------gtactatactatatgctatgcatttttatgaatatcaatcattgctgccaccctccacatgcagtgcac |
195 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35130404 |
cttttccaacatattcaaagatatggtaggagtactatactatatgctatgcatttttatgaatatcaatcattgctgtcaccctccacatgcagtgcac |
35130305 |
T |
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| Q |
196 |
acaacatcaaaacaaggtgccatatataatggaaccactcattgaaaaataac |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130304 |
acaacatcaaaacaaggtgccatatataatggaaccactcattgaaaaataac |
35130252 |
T |
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