View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_high_7 (Length: 336)
Name: NF4500_high_7
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_high_7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 31155206 - 31154884
Alignment:
| Q |
14 |
aaaggtgaagaaactcagtttgtgatttccgaagccagcaagaaaccaaataatcgatcaagtgttcaagcctcctcttcaatgatcaattgtcaacacg |
113 |
Q |
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| T |
31155206 |
aaagatgaagaaactcagtttgtgatttccgaagccagcaagaaaccaaataatcaatcaagtgttcaagcctcctcttcaatgatcaagtgtcaacacg |
31155107 |
T |
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| Q |
114 |
cggacaaagttgatcgatttttgcaagatcacaattgcaagaaaggtgagaagctttctgattcactaatacgtttgtcggggtgcatctctgtttttta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| |
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| T |
31155106 |
cggacaaagttgatcgatttttgcaagatcacaattgcaagaaaggtgagaagctttctgattcactaatatgttcgtcggggagcatctctgtttttta |
31155007 |
T |
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| Q |
214 |
ttacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatg |
313 |
Q |
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| T |
31155006 |
ttacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattttggtgtatgttgttcccaaagttcttcgtcacacatg |
31154907 |
T |
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| Q |
314 |
ttcacgtttgtggtggatacctt |
336 |
Q |
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| T |
31154906 |
ttcacgtttgtggtggatacctt |
31154884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 28125862 - 28125763
Alignment:
| Q |
237 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
336 |
Q |
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| T |
28125862 |
gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttcgcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
28125763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 44962371 - 44962414
Alignment:
| Q |
293 |
caaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
336 |
Q |
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| T |
44962371 |
caaagttcttcgccacacacgttcacgtttatggtggatacctt |
44962414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 5377661 - 5377760
Alignment:
| Q |
237 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
336 |
Q |
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| T |
5377661 |
gatttcgtattcgatcccggcggtgctttttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
5377760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 52519543 - 52519642
Alignment:
| Q |
237 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
336 |
Q |
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| T |
52519543 |
gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
52519642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 17450143 - 17450249
Alignment:
| Q |
230 |
ttgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtgg |
329 |
Q |
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||||| |||||||||||| ||||| || || | ||||||| |||| | ||| |||||| ||||||||||| |||||| |||||||||| |||||| |
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| T |
17450143 |
ttgttcagattttgtattcgatcccggcggaatgatttctttaattccgttgtgtgttgtcgtcaaagttcttcaccacacacgttcacgtttatggtgg |
17450242 |
T |
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| Q |
330 |
atacctt |
336 |
Q |
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||||||| |
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| T |
17450243 |
atacctt |
17450249 |
T |
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