View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4500_low_1 (Length: 361)
Name: NF4500_low_1
Description: NF4500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4500_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 35379231 - 35378903
Alignment:
| Q |
15 |
gacaattgaagaatgatgatgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaattccactggtccagca |
114 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
35379231 |
gacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaactcgactggtccagca |
35379132 |
T |
|
| Q |
115 |
tgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtgcagtga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35379131 |
tgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtacagtga |
35379032 |
T |
|
| Q |
215 |
acaacatttgatcatccctgcaaatattacaaaatatcaataatttggtcaaatatttaaaatagataannnnnnnattagattatcaaataattggata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35379031 |
acaacatttgatcatccctgcaaatattacaaaatatcaataatttggtcaaatatttaaaatagataatttttttattagattatcaaataattggata |
35378932 |
T |
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| Q |
315 |
acctcgtttaaagtgaacaacccacttta |
343 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
35378931 |
acctcgtttaaagtgaacaacccacttta |
35378903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 35354726 - 35354503
Alignment:
| Q |
16 |
acaattgaagaatgatgatgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaattccactggtccagcat |
115 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35354726 |
acaattgaagaatggtgatgagagtgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaactccactggtccagcat |
35354627 |
T |
|
| Q |
116 |
gcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtgcagtgaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||||| ||||||||||| |
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| T |
35354626 |
gcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatcctatataatatactagtgcagtgaa |
35354527 |
T |
|
| Q |
216 |
caacatttgatcatccctgcaaat |
239 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
35354526 |
caatatttgatcatccctgcaaat |
35354503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 35369872 - 35369648
Alignment:
| Q |
15 |
gacaattgaagaatgatgatgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaattccactggtccagca |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
35369872 |
gacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaactcgactggtccagca |
35369773 |
T |
|
| Q |
115 |
tgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtgcagtga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| | |||| |||||||||| |
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|
| T |
35369772 |
tgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatcctatgtagtataacagtgcagtga |
35369673 |
T |
|
| Q |
215 |
acaacatttgatcatccctgcaaat |
239 |
Q |
| |
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|||| ||||| |||||||||||||| |
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| T |
35369672 |
acaaaatttggtcatccctgcaaat |
35369648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 19630504 - 19630728
Alignment:
| Q |
15 |
gacaattgaagaatgatgatgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaattccactggtccagca |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |
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|
| T |
19630504 |
gacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccaatagtataagaactccactggtccagca |
19630603 |
T |
|
| Q |
115 |
tgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtgcagtga |
214 |
Q |
| |
|
||||| | |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||| | | |||||||| | |
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| T |
19630604 |
tgcaagagagctgtaagaaccacaccatctgttctccaccatggtaagttagcagccataggaaatattgtgtatagtatatagaaggttagtgcagtca |
19630703 |
T |
|
| Q |
215 |
acaacatttgatcatccctgcaaat |
239 |
Q |
| |
|
|||| |||||||||||||||||||| |
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|
| T |
19630704 |
acaatatttgatcatccctgcaaat |
19630728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 19684293 - 19684069
Alignment:
| Q |
15 |
gacaattgaagaatgatgatgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaattccactggtccagca |
114 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |
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|
| T |
19684293 |
gacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgtagccaatagtataagaactccactggtccagca |
19684194 |
T |
|
| Q |
115 |
tgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtgcagtga |
214 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||| |||| || | | | |||||||| |
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| T |
19684193 |
tgcaagatagctgtaagaatcacaccatctgttctccaccatggtaagttggcagccataggaaatatcgtgtaaagtatataaaacattaatgcagtga |
19684094 |
T |
|
| Q |
215 |
acaacatttgatcatccctgcaaat |
239 |
Q |
| |
|
|||| |||||||||||||||||||| |
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| T |
19684093 |
acaatatttgatcatccctgcaaat |
19684069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 2258463 - 2258558
Alignment:
| Q |
16 |
acaattgaagaatgatgatgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaattccactggtcca |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||| || || ||||||||||||||||||| || | ||||||||| | ||| |||||||||||| |
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|
| T |
2258463 |
acaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagtaaagaaactccactggtcca |
2258558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 2280453 - 2280553
Alignment:
| Q |
16 |
acaattgaagaatgatgatgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaattccactggtccagcat |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||| || || ||||||||||||||||||| || | |||||| || | |||||| |||| |||||||| |
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| T |
2280453 |
acaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccagcat |
2280552 |
T |
|
| Q |
116 |
g |
116 |
Q |
| |
|
| |
|
|
| T |
2280553 |
g |
2280553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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