View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4501-Insertion-1 (Length: 956)
Name: NF4501-Insertion-1
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-1 |
 | |
|
| [»] scaffold0031 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 692; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 104 - 932
Target Start/End: Complemental strand, 13915863 - 13915031
Alignment:
| Q |
104 |
gattggatagcacatacatttgccttttgaatgcttttcatgttgcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccct |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13915863 |
gattggatagcacatacatttgccctttgaatgcttttcatgttgcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccct |
13915764 |
T |
|
| Q |
204 |
cactcaaccaattttttaacaaacactaccccacatgtgttgtcctattctcatttgtccaatgacaaatgtgtcaaaaatcatattttcttcttcccta |
303 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13915763 |
cactcaaccaattttttaacagacactaccccacatgtgttgtcctattctcattggtccaatgacaaatgtgttaaaaatcatattttcttcttcccta |
13915664 |
T |
|
| Q |
304 |
taaata----tataccatcatccctcaatctctcacacactatcttatttactctcttcctaagtatctaaaatttaattttcactatggcaactcagcc |
399 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
13915663 |
taaataaatatataccatcatccctcaatttctcacacactatcttatttactctcttcctaagtatctaaaatttaatttttaccatggcaactcagcc |
13915564 |
T |
|
| Q |
400 |
atccgccccagcagcagtgaagtgcaatgtcaaattggagcatattaatgaagtctacgacgattggtacttggtaccagtggagacgctatcagagcta |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
13915563 |
atccgccccagcagcagtgaagtgcaatgtcaaattggagcatattgatgaagtctacgacgcttggtacttggtactagtggagacgctatcagaacta |
13915464 |
T |
|
| Q |
500 |
tctcgttacttcaacgattatttcatgagataccatgaatcaactcgtagggtgnnnnnnntttgctacataacaccatactacccgttggatacggtcc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
13915463 |
tctcgttacttcaacgattatttcatgaggtaccatgaaccaactcgtagggtgaaaaaaatttgctgcataacaccatactacccgttggatacagtcc |
13915364 |
T |
|
| Q |
600 |
acaacgactagaaattaagctacgatatcaagtatcttgaaaccgaccgtgatgttcaagacatgtttcaatggaggacaaacacagggggacccattgt |
699 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13915363 |
acaacgattggaaattaagctacgatatcaagtatcttgaaaccgaccgtgatgttcaagacatgtttcaatggaggacaaacaca-ggggacccattgt |
13915265 |
T |
|
| Q |
700 |
atttacatgttgcaactcaattaatcgactggtagattccaccgattattgctatcctacttaatgcattgtattttgatgaaatatgtcttttgtaatt |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13915264 |
atttacatgttgcaactcaattaatcgactggtagattccaccgattattgctatcctacttaatggattgtattttgatgaaatatgtcttttgtaatt |
13915165 |
T |
|
| Q |
800 |
tcaactacatgtattcgcgtaatcattgttatattatgataatttatttggattatgttttacagaaacaattgttg-tttgctatggtaagtacattaa |
898 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
13915164 |
tcaactacatgtattcgcgtaatcattgttatattatgataatttattttgattatgttttacagaaataattgttgttttgctatgttaagtacattaa |
13915065 |
T |
|
| Q |
899 |
tatcaattgaagtgacgaaataatatacataatt |
932 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
13915064 |
tatcaattgaggtgacgaaataatatacataatt |
13915031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 17316680 - 17316825
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaacc |
212 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
17316680 |
cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattccctaaattggatggtccctcactcaacc |
17316779 |
T |
|
| Q |
213 |
aattttttaacaaacactaccccacatgtgttgtcctattctcatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
17316780 |
aattttttaacaaacagtaccccacatgtgttgtcctattgtcatt |
17316825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 17320939 - 17321020
Alignment:
| Q |
104 |
gattggatagcacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17320939 |
gattggatagcacattcatttgctttttcaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattc |
17321020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 17321020 - 17321091
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17321020 |
cacattcatttgctttttgaatgcttttgatgttggcatgcatatgtctttcaacttcaatctcagagattc |
17321091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 17321091 - 17321144
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgtt-gcatgcatatgtctttcaa |
166 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17321091 |
cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaa |
17321144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 17316644 - 17316680
Alignment:
| Q |
148 |
gcatgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17316644 |
gcatgcatatgtctttcaacttcaatctcagagattc |
17316680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 104 - 604
Target Start/End: Complemental strand, 29066739 - 29066239
Alignment:
| Q |
104 |
gattggatagcacatacatttgccttttgaatgcttttcatgttgcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccct |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
29066739 |
gattggataggacatacatttgccttttgaatgctttttatgttgcatgcatatgtctttcaacttcaatcttagagattccataaattggatactccct |
29066640 |
T |
|
| Q |
204 |
cactcaaccaattttttaacaaacactaccccacatgtgttgtcctattctcatttgtccaatgacaaatgtgtcaaaaatcatattttcttcttcccta |
303 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29066639 |
cactcaatcaattttttaacaaacactaccccacatgtgttgtcctattctcattggtccaatgacaaatgtgttaaaaatcatattttcttcttcccta |
29066540 |
T |
|
| Q |
304 |
taaatatataccatcatccctcaatctctcacacactatcttatttactctcttcctaagtatctaaaatttaattttcactatggcaactcagccatcc |
403 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29066539 |
taaatatataccatcattcttcaatttctcacacactatcttatttactctcttcctaagtatctaaaatttaatttttactatggcaactcagccatcc |
29066440 |
T |
|
| Q |
404 |
gccccagcagcagtgaagtgcaatgtcaaattggagcatattaatgaagtctacgacgattggtacttggtaccagtggagacgctatcagagctatctc |
503 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
29066439 |
gccccagcagcagtgatgtgcaatgtcaaattggagcatattgatgaagtctacgacgctttgtacttggtactagtgtagacgctatcagaattatctc |
29066340 |
T |
|
| Q |
504 |
gttacttcaacgattatttcatgagataccatgaatcaactcgtagggtgnnnnnnntttgctacataacaccatactacccgttggatacggtccacaa |
603 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29066339 |
gttacttcaacgattatttcatgaggtaccatgaaccaactcgtagggtgaaaaaaatttgctacataacaccatactacccgttggatacggtccacaa |
29066240 |
T |
|
| Q |
604 |
c |
604 |
Q |
| |
|
| |
|
|
| T |
29066239 |
c |
29066239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 610 - 932
Target Start/End: Original strand, 15776111 - 15776433
Alignment:
| Q |
610 |
gaaattaagctacgatatcaagtatcttgaaaccgaccgtgatgttcaagacatgtttcaatggaggacaaacacagggggacccattgtatttacatgt |
709 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15776111 |
gaaattaagctacgagatcaagtatcttgaaaccgaccgtgatgttcaagacatgtttcaatggaggacaaacacagggg-acccattgtatttacatgt |
15776209 |
T |
|
| Q |
710 |
tgcaactcaattaatcgactggtagattccaccgattattgctatcctacttaatgcattgtattttgatgaaatatgtcttttgtaatttcaactacat |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15776210 |
tgcaactcaattaatcgactggtagattccacagattattgctatcctacttaatgcattgtattttgatgaaatatgtcttttgtaatttcaactacat |
15776309 |
T |
|
| Q |
810 |
gtattcgcgtaatcattgttatattatgataatttatttggattatgttttacagaaacaattgtt-gtttgctatggtaagtacattaatatcaattga |
908 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
15776310 |
gtattcgcgtaatcattgttatattatgataatttatttggattatgttttaccgaaataattgttattttgctatgttaagtacattaatatcaattga |
15776409 |
T |
|
| Q |
909 |
agtgacgaaataatatacataatt |
932 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
15776410 |
ggtgatgaaataatatacataatt |
15776433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 16536851 - 16536663
Alignment:
| Q |
120 |
catttgccttttgaatgcttttcatgtt-gcatgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaaccaatttt |
218 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
16536851 |
catttgctttttgaatgcttttcatgttagcatgcatatgtctttcaacttcaatctcagagattccataaattggatggtccttcactcaaccaatttt |
16536752 |
T |
|
| Q |
219 |
ttaacaaacactaccccacatgtgttgtcctattctcatttgtccaatgacaaatgtgtcaaaaatcatattttcttcttccctataaa |
307 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16536751 |
ttaacaaacactacaccacatgtgttgtcctattgtcattggaccaatgacaaatgtgttaaaaatcatattttcttcttccctataaa |
16536663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 24021988 - 24022133
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaacc |
212 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
24021988 |
cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattccctaaattggatggtccctcactcaacc |
24022087 |
T |
|
| Q |
213 |
aattttttaacaaacactaccccacatgtgttgtcctattctcatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24022088 |
aattttttaacaaacagtaccccacatgtgttgtcctattgtcatt |
24022133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 24021836 - 24021917
Alignment:
| Q |
104 |
gattggatagcacatacatttgccttttgaatgcttttcatgtt-gcatgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24021836 |
gattggatagcacattcatttgctttttgaatacttttcatgttggcatgcatgtgtctttcaacttcaatctcagagattc |
24021917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 24021917 - 24021988
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24021917 |
cacattcatttgctttttgaatgcttttgatgttggcatgcatatgtctttcaagttcaatctcagagattc |
24021988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 114 - 258
Target Start/End: Complemental strand, 22282971 - 22282826
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattccataaattggatgctccctcactcaacc |
212 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
22282971 |
cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattccctaaattggatggtccctcactcaacc |
22282872 |
T |
|
| Q |
213 |
aattttttaacaaacactaccccacatgtgttgtcctattctcatt |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22282871 |
aattttttaacaaacagtaccccacatgtgttgtcctattgtcatt |
22282826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 22283022 - 22282971
Alignment:
| Q |
134 |
atgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22283022 |
atgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattc |
22282971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 84797 - 84716
Alignment:
| Q |
104 |
gattggatagcacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
84797 |
gattggatagcacattcatttgctttttcaatgcttttcatgttggcatgcatatgtctttcaacttcaatctcagagattc |
84716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 84716 - 84645
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgttg-catgcatatgtctttcaacttcaatctcagagattc |
184 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
84716 |
cacattcatttgctttttgaatgcttttgatgttggcatgcatatgtctttcaacttcaatctcagagattc |
84645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 84645 - 84592
Alignment:
| Q |
114 |
cacatacatttgccttttgaatgcttttcatgtt-gcatgcatatgtctttcaa |
166 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
84645 |
cacattcatttgctttttgaatgcttttcatgttggcatgcatatgtctttcaa |
84592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University