View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501-Insertion-11 (Length: 241)
Name: NF4501-Insertion-11
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-11 |
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| [»] scaffold0373 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0373 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 5787 - 6017
Alignment:
| Q |
11 |
tacactccagcaatacccgttgtgcattcatagtttcttgtattagttggatttttcttcactaagagtttgtattttgtctttttggaaacattcacaa |
110 |
Q |
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| T |
5787 |
tacactccagccataccagttgtgcattcatagtttcttgtattagttggatttttcttcaccaagagtttgtattttgtctttttggaaacattcacaa |
5886 |
T |
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| Q |
111 |
tactgcaatttgtttctaataaatagaatactttctttctgacgtagaagatcaaattaaaatgtaaccatagaccataataagatcttctatgtgaatg |
210 |
Q |
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| T |
5887 |
tactgcaatttgtttctaataaatagaatactttctttctgacgtagaagatcaaattaaaatgtaaccatagaccataataagatcttctatgtgaatg |
5986 |
T |
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| Q |
211 |
gcactaaaaaaggctttcttgataagtcgta |
241 |
Q |
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| T |
5987 |
gcactaaaaaaggctttcttgataagtcgta |
6017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 6851240 - 6851010
Alignment:
| Q |
11 |
tacactccagcaatacccgttgtgcattcatagtttcttgtattagttggatttttcttcactaagagtttgtattttgtctttttggaaacattcacaa |
110 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6851240 |
tacactccagccataccagttgtgcattcatagtttcttgtattagttggatttttcttcaccaagagtttgtattttgtctttttggaaacattcacaa |
6851141 |
T |
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| Q |
111 |
tactgcaatttgtttctaataaatagaatactttctttctgacgtagaagatcaaattaaaatgtaaccatagaccataataagatcttctatgtgaatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6851140 |
tactgcaatttgtttctaataaatagaatactttctttctgacgtagaagatcaaattaaaatgtaaccatagaccataataagatcttctatgtgaatg |
6851041 |
T |
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| Q |
211 |
gcactaaaaaaggctttcttgataagtcgta |
241 |
Q |
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| T |
6851040 |
gcactaaaaaaggctttcttgataagtcgta |
6851010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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