View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501-Insertion-13 (Length: 171)
Name: NF4501-Insertion-13
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 39489641 - 39489478
Alignment:
| Q |
8 |
agttccgctcctgaaacacgatttcaccaattcctttgatgtttgggtaaatgcaaatgtgattccctatatcgtgcatctagacccaaatgcgagttca |
107 |
Q |
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| T |
39489641 |
agttccgctcctgaaacacgatttcaccaattcctttgatgtttgggtaaatgcaaatgtgattccctatatcgtgcatctagacccaaatgcgagttca |
39489542 |
T |
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| Q |
108 |
cttcaaagccacaaattggagcttccacgaaaaagcaataaattttcaatgataggtctacttc |
171 |
Q |
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| T |
39489541 |
cttcaaagccacaaattggagcttccacgacaaagcaataaattttcaatgataggtctacttc |
39489478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 39500831 - 39500668
Alignment:
| Q |
8 |
agttccgctcctgaaacacgatttcaccaattcctttgatgtttgggtaaatgcaaatgtgattccctatatcgtgcatctagacccaaatgcgagttca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39500831 |
agttccgctcctgaaacacgatttcaccaattcctttgatgtttgggtaaatgcaaatgtgattccctatatcgtgcatctagacccaaatgcgagttca |
39500732 |
T |
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| Q |
108 |
cttcaaagccacaaattggagcttccacgaaaaagcaataaattttcaatgataggtctacttc |
171 |
Q |
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| T |
39500731 |
cttcaaagccacaaattggagcttccacgacaaagcaataaattttcaatgataggtctacttc |
39500668 |
T |
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