View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501-Insertion-14 (Length: 156)
Name: NF4501-Insertion-14
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-14 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 7e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 7e-72
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 10968819 - 10968671
Alignment:
| Q |
8 |
ctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactc |
107 |
Q |
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| T |
10968819 |
ctcttgcctctttagcacttattttcatcttgaaaataattttcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactc |
10968720 |
T |
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| Q |
108 |
ggttccactcacaaacccgtcttttgaatccttcagttccaaagcaacc |
156 |
Q |
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| T |
10968719 |
ggttccactcacaaacccgtcttttgaatccttcagttccaaagcaacc |
10968671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 10982769 - 10982621
Alignment:
| Q |
8 |
ctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactc |
107 |
Q |
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| T |
10982769 |
ctcttgcctctttagcacttattttcatcttgaaaataatttgtctaatctctttccccttatcggagtccattaattccttaatttgatcccctaactc |
10982670 |
T |
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| Q |
108 |
ggttccactcacaaacccgtcttttgaatccttcagttccaaagcaacc |
156 |
Q |
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| T |
10982669 |
ggttccactcacaaacccgtcttttgaatccttcaattccaaagcaacc |
10982621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 11002988 - 11002855
Alignment:
| Q |
19 |
ttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactca |
118 |
Q |
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| T |
11002988 |
ttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgattccatcaactccttaactctctcccccaactcatttccactca |
11002889 |
T |
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| Q |
119 |
caaacccgtcttttgaatccttcagttccaaagc |
152 |
Q |
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| T |
11002888 |
caaaccctttttttgacccatttagttccaaagc |
11002855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 11080129 - 11079996
Alignment:
| Q |
19 |
ttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactca |
118 |
Q |
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| T |
11080129 |
ttagcacttattttcatcttcaaaattgtctctctaacctctttccccttttctgattccatcaactccttaactctctcccccaactcattttcactca |
11080030 |
T |
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| Q |
119 |
caaacccgtcttttgaatccttcagttccaaagc |
152 |
Q |
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| T |
11080029 |
caaacccatcttttgactcattcaattccaaagc |
11079996 |
T |
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