View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501-Insertion-4 (Length: 550)
Name: NF4501-Insertion-4
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 112 - 370
Target Start/End: Original strand, 54088916 - 54089175
Alignment:
| Q |
112 |
aaatcctttaaattgatgtaggaacttggatgcttatccaaacgacactttga-gccttattatatcattccaaatttcattttcagtcatgattaattc |
210 |
Q |
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| T |
54088916 |
aaatcctttaaattgatgtaggaacttggatgcttatccaaacgacactttgctgccttattatatcattccaaatttcattttcagtcatgattaattc |
54089015 |
T |
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| Q |
211 |
aaaagctatgatctctaatttgtacgcgtaaaagaaacaagcacacacatatcttctctttagaataaaaaacaagaatatgccgatctttaatataatc |
310 |
Q |
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| T |
54089016 |
aaaagctatgatctctaatttgtacgtgtgaaagaaacaaacacacacatatcttctctttagaataaaaaacaagaatatgccgatctttaatataatc |
54089115 |
T |
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| Q |
311 |
cttaatttaatccataaattaccactctccaatttactttactacttaggtctcactacc |
370 |
Q |
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| T |
54089116 |
cttaatttaatccataaattaccactctccaatttactttactacttaggtctcactacc |
54089175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 393 - 536
Target Start/End: Original strand, 54089384 - 54089527
Alignment:
| Q |
393 |
caattgaaaagggaagactcaattttttcacgtatcttttatgggcaaaaagaaagatcggtgtgtgtattgttacatatattttttaaaggacatattg |
492 |
Q |
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| T |
54089384 |
caattgaaaagggaagactcaattttttcacgtatcttttataagcaaaaagaaagatcggtgtgtgtattgttacatatattttttaaaggacatattg |
54089483 |
T |
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| Q |
493 |
ttacatttcttttgtgtgtacacacacatcatatttacaatatc |
536 |
Q |
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| T |
54089484 |
ttacatttctgttgtgtgtacacacacatcatatttacaatatc |
54089527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 54088778 - 54088841
Alignment:
| Q |
8 |
atatatgcatgtgtgtccatggttcaatgtttcttcctttctatttctttgtataaataaacat |
71 |
Q |
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| T |
54088778 |
atatatgcatgtgtgtccatggttcaatgtttcttcctttctatttctttgtataaataaacat |
54088841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 54088856 - 54088887
Alignment:
| Q |
84 |
acgagcggagactcttggttctcatgctaaat |
115 |
Q |
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| T |
54088856 |
acgagcggagactcttggttctcatgctaaat |
54088887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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