View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4501-Insertion-5 (Length: 492)
Name: NF4501-Insertion-5
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Original strand, 6310036 - 6310520
Alignment:
| Q |
8 |
ccaaatcagcaacagcaggcaagccaataacaacattataaacagaccaagaatcaat----gacaaagtaccttaccttaatcatcttcacattccctc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310036 |
ccaaatcagcaacagcaggcaagccaataacaacattataaacagaccaagaatcaattaatgacaaagtaccttaccttaatcatcttcacattccctc |
6310135 |
T |
|
| Q |
104 |
ctttaccgaatgttgtgtccaaatcaacgtatcctttgaccggcacaccatcgccaaaagtacccttcagaaatccttcaaatggtttcagcattgactc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310136 |
ctttaccgaatgttgtgtccaaatcaacgtatcctttgaccggcacaccatcgccaaaagtacccttcagaaatccttcaaatggtttcagcattgactc |
6310235 |
T |
|
| Q |
204 |
ttccagtcccatcttcaagaatgcggaccagtaaagaatgttcgcgctgcttccctcgttaacagagactcttaaaacagtgttgttgttgatttggagt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310236 |
ttccagtcccatcttcaagaatgcggaccagtaaagaatgttcgcgctgcttccctggttaacagagactcttaaaacagtgttgttgttgatttggagt |
6310335 |
T |
|
| Q |
304 |
ttaataaccatagagagaggtttgaataataatgttacttaaaggagtgaggagaatggattgtaaccgctggctatct-------------------gt |
384 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6310336 |
ttaataaccatagagagaggtttg---aataatgttacttaaaggagtgaggagaatggattgtaaccgctggctatctgtagctaatgttgcggggagt |
6310432 |
T |
|
| Q |
385 |
ggcgtgactgagaggttcagcagaaaacggttgaaaacatttgtgctactaacgtacggaaacacatacaaatagaattcgattaaga |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310433 |
ggcgtgactgagaggttcagcagaaaacggttgaaaacatttgtgctactaacgtacggaaacacatacaaatagaattcgattaaga |
6310520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 6327153 - 6327294
Alignment:
| Q |
103 |
cctttaccgaatgttgtgtccaaatcaacgtatcctttgaccggcacaccatcgccaaaagtacccttcagaaatccttcaaatggtttcagcattgact |
202 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||| || || | ||| | |||||||||||||| |||||||||| | ||||||| |||||||| | |
|
|
| T |
6327153 |
cctttaccaaaagttgtgtccaaatcaatgtatcctttcactggtaaaccttttccaaaagtacccttgagaaatccttgacatggtttgagcattgatt |
6327252 |
T |
|
| Q |
203 |
cttccagtcccatcttcaagaatgcggaccagtaaagaatgt |
244 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6327253 |
cttgtagtttcatcttcaagaatgcggaccagtaaagaatgt |
6327294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 63 - 246
Target Start/End: Original strand, 6323753 - 6323935
Alignment:
| Q |
63 |
aatgacaaagtaccttaccttaatcatcttcacattccctcctttaccgaatgttgtgtccaaatcaacgtatcctttgaccggcacaccatcgccaaaa |
162 |
Q |
| |
|
|||||| |||||||| ||||| ||||| || | ||||||| ||| |||||||||||||||||||||| |||||||| || || ||||||| || | | |
|
|
| T |
6323753 |
aatgacgaagtacctcaccttgatcattttggc-ttccctcattttccgaatgttgtgtccaaatcaatatatcctttcactggtacaccatttccgata |
6323851 |
T |
|
| Q |
163 |
gtacccttcagaaatccttcaaatggtttcagcattgactcttccagtcccatcttcaagaatgcggaccagtaaagaatgttc |
246 |
Q |
| |
|
|||||| ||| || |||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
6323852 |
acacccttgagatatgcttctaatggtttcagcattgtctctaacagtcccatcttcaagaacgcggaccagtagagaatgttc |
6323935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 244
Target Start/End: Original strand, 6317911 - 6318052
Alignment:
| Q |
103 |
cctttaccgaatgttgtgtccaaatcaacgtatcctttgaccggcacaccatcgccaaaagtacccttcagaaatccttcaaatggtttcagcattgact |
202 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||||||||| || ||||| | ||||||||| ||| |||||| ||| | ||||||| |||||||| | |
|
|
| T |
6317911 |
cctttaccaaaagttgtgtccaaatcaatgtatcctttgactggtacaccttttccaaaagtatacttgagaaatgcttgacatggtttgagcattgatt |
6318010 |
T |
|
| Q |
203 |
cttccagtcccatcttcaagaatgcggaccagtaaagaatgt |
244 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6318011 |
ctgaaagtcccatcttcaagaatgcggaccagtagagaatgt |
6318052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 6330064 - 6330140
Alignment:
| Q |
31 |
ccaataacaacattataaacagaccaagaatcaatgacaaagtaccttaccttaatcatcttcacattccctccttt |
107 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||| |||||||| ||||| |||||||| ||||||| ||||| |
|
|
| T |
6330064 |
ccaataacaacattataaatagagtgtgaatcaacgaccaagtacctcaccttgatcatcttggcattcccaccttt |
6330140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University