View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501-Insertion-8 (Length: 385)
Name: NF4501-Insertion-8
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 28369855 - 28370232
Alignment:
| Q |
8 |
cctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactgtcagaaacaacgttgttgattagcatttggttataaataag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28369855 |
cctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactatcagaaacaacgttgttgattagcatttggttataaataag |
28369954 |
T |
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| Q |
108 |
caaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaa |
207 |
Q |
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| T |
28369955 |
caaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaa |
28370054 |
T |
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| Q |
208 |
taagcgtgtgagaggttaccgaatggcgaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgagagtgaagacctgatttggtgattatgg |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28370055 |
taagcgtgtgagaggttaccgaatggagaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgagagtgaagacctgatttggtgattatgg |
28370154 |
T |
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| Q |
308 |
cttgaagttgttttagttctgatatggatgagagtttgttgagtagggacgttgctcggtaaaatgtgcttcccgtca |
385 |
Q |
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| T |
28370155 |
cttgaagttgttttagttctgatatggatgagagtttgttgagtagggacgttgctcgggaaaatgtgcttcccgtca |
28370232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 44776657 - 44776280
Alignment:
| Q |
8 |
cctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactgtcagaaacaacgttgttgattagcatttggttataaataag |
107 |
Q |
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| T |
44776657 |
cctgtatcaacttataagctctggaacaagctttaagcacaaagttgcaagtgtaactatcagaaacaacgttgttgattagcatttggttataaataag |
44776558 |
T |
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| Q |
108 |
caaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776557 |
caaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaa |
44776458 |
T |
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| Q |
208 |
taagcgtgtgagaggttaccgaatggcgaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgagagtgaagacctgatttggtgattatgg |
307 |
Q |
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| T |
44776457 |
taagcgtgtgagaggttaccgaatggagaaagagctgaaaagaaaatgagtttggttgtgaggggaatgtgagagtgaagacctgatttggtgattatgg |
44776358 |
T |
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| Q |
308 |
cttgaagttgttttagttctgatatggatgagagtttgttgagtagggacgttgctcggtaaaatgtgcttcccgtca |
385 |
Q |
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| T |
44776357 |
cttgaagttgttttagttctgacatggatgagagtttgttgagtagggacgttgctcgggaaaatgtgcttcccgtca |
44776280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 2349398 - 2349315
Alignment:
| Q |
108 |
caaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaatggaaga |
191 |
Q |
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|||||||||| |||||||||||| | |||||||||| |||||| |||||| |||| ||||| ||||| ||||||||||||| |
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| T |
2349398 |
caaggcttgaggagggaaacaacctttagaaaaagcatcaatcatagtgttgaaaataaagggtttgtgcgtaagaatggaaga |
2349315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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