View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501-Insertion-9 (Length: 359)
Name: NF4501-Insertion-9
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 37006363 - 37006648
Alignment:
| Q |
8 |
ctcactgtatccaaaacagaaacagaggtatcctcttccaaatctgcttccaaatctgctgcaattgattcatcatttagctgcagccacaaacagtttc |
107 |
Q |
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| T |
37006363 |
ctcactgtatccaaaacagaaacagaggtatcctcttccaaatctgct------------gcaatcgattcatcattttgctgcagccacaaacagtttc |
37006450 |
T |
|
| Q |
108 |
tagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaatcaaatttaccgtttgcttattctcttctacacatttatcattgttcttt |
207 |
Q |
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|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37006451 |
tagtaagtagctaaca-aaataagaaaaacccatctatttacagccaaaatcaaatttaccgtttgcttattctcttctacacatttatcatttttcttt |
37006549 |
T |
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| Q |
208 |
ggtttagcctacaaaacaaga--nnnnnnnnnctttcataaaccgatcaaaatgatgataaacatataaacaaacatatatgtgtgacagtgacacacc |
304 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37006550 |
ggtttagcctacaaaacaagatttttttttttttttcataaaccgatcaaaatgatgataaacatataaacaaacatatatgtgtgacagtgacacacc |
37006648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 36996568 - 36996737
Alignment:
| Q |
58 |
caaatctgctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaa |
157 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
36996568 |
caaatctgctgcaatcgattcatcatttagctgcagccacaaacagtttctagtaagtagttaaga-aaataagaaaaacccatctatttacagccaaaa |
36996666 |
T |
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| Q |
158 |
tcaaatttaccgtttgcttattctcttctacacatttatcattgttctttggtttagcctacaaaacaaga |
228 |
Q |
| |
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| T |
36996667 |
tcaagtttaccgtttgcttattctcttctacacatttatcatttttctttggtttagcctacaaaacaaga |
36996737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 62 - 210
Target Start/End: Complemental strand, 34592797 - 34592650
Alignment:
| Q |
62 |
tctgctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaatcaa |
161 |
Q |
| |
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||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
34592797 |
tctgctgcaatcgattcgtcatttttctgcagccacaaacagtttctatcaagtagttaaca-aaataagaaaaacccatctatttacagccaaaatcaa |
34592699 |
T |
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| Q |
162 |
atttaccgtttgcttattctcttctacacatttatcattgttctttggt |
210 |
Q |
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| T |
34592698 |
gtttaccgtttgctccatctcttctacacatttatcatttctctttggt |
34592650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 33078418 - 33078263
Alignment:
| Q |
54 |
cttccaaatctgctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagcc |
153 |
Q |
| |
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||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
33078418 |
cttccaaatctgctgcaatcgattcatcattttgctgcagccacagacagtttctatcaagtagttaaca-aaataagaaaaacccatctatttacagcc |
33078320 |
T |
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| Q |
154 |
aaaatcaaatttaccgtttgcttattctcttctacacatttatcattgttctttggt |
210 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
33078319 |
aaaatcaagtttaccgtttgctccatctcttctacacatttatcatttctctttggt |
33078263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 24409757 - 24409891
Alignment:
| Q |
65 |
gctgcaattgattcatcatttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaatcaaatt |
164 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||||| ||||| ||||||||||||| |||| | |
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| T |
24409757 |
gctgcaatcaattcatcattttgctgcagccacaaacagtttctagtaagcagttaaca-aagtaagaaaaacccatccatttacagccaaattcaagat |
24409855 |
T |
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| Q |
165 |
taccgtttgcttattctcttctacacatttatcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24409856 |
taccgtttgcttattctcttctacacatttatcatt |
24409891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 26646426 - 26646519
Alignment:
| Q |
82 |
atttagctgcagccacaaacagtttctagtaagtagttaacagaaataagaaaaaaccatctatttacagccaaaatcaaatttaccgtttgctt |
176 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||| |||||||| |||||| ||||||| |
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| T |
26646426 |
attttgctgcagccacaaacagtttctatcaagtagttaaca-aaataagaaaaaccgatctatttacagcaaaaatcaagtttaccttttgctt |
26646519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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