View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_10 (Length: 492)
Name: NF4501_high_10
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 39115196 - 39115659
Alignment:
| Q |
17 |
aaattcattaggacatatatgtttaaccaaattcaaatcacaagtataagtaataattaattctctaatcttaatattctcgtgacatcgtacatggtta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115196 |
aaattcattaggacatatatgtttaaccaaattcaaatcacaagtataagtaataactaattctctaatcttaatattctcgtgacatcgtacatggtta |
39115295 |
T |
|
| Q |
117 |
acatgtagtaaaatttaaaaagggtttggtttatcaacaacaataaacaattgattctttagaataatggggcatacataaagagtcaactaagatgctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115296 |
acatgtagtaaaatttaaaaagggtttggtttatcaacaacaataaacaattgattctttagaataatggggcatacataaagagtcaactaagatgctc |
39115395 |
T |
|
| Q |
217 |
tgcttcataacttcagtctttggctttacgcttggcatccttctgtcaaagttttatcattatctt-aacttcatcaataattgtgattattacaattga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39115396 |
tgcttcataacttcagtctttggctttacgcttggcatccttctgtcaaagttttatcattatcttaaacttcatcaataattgtgattattacaattga |
39115495 |
T |
|
| Q |
316 |
tcaataaagttgattgtggaccaaatctgagtcatatatttggtagttaggagatcaaatagtagtactgtattcaactactaacaaaaaattaaagatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
39115496 |
tcaataaagttgattgtggaccaaatctgagtcatatatttggtagttaggagatcaaatagtagtactgtattca---actaac-aaaaattaaagatg |
39115591 |
T |
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| Q |
416 |
tgatgtgcccaggttgtttccactcaaatttcccccttataattctccttaatattcgagagaataat |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39115592 |
tgatgtgcccaggttgtttccactcaaatttcccccttataattctccttaatattcgagagaataat |
39115659 |
T |
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