View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_11 (Length: 472)
Name: NF4501_high_11
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Original strand, 42278159 - 42278626
Alignment:
| Q |
13 |
taacttgcatatgatggccatatttggcatcnnnnnnntgtcattgttgtttaacagcaaatataaaagttggcattatcaatatggaaagtcttgagga |
112 |
Q |
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| T |
42278159 |
taacttgcatatgatggccatagttggcataaaaaaaatgtcattgttgtttaacagcaaatataaaagttggcactatcaatatggaaagtcttgagga |
42278258 |
T |
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| Q |
113 |
agaataggttttaactacggttaaactgtggctaatgtgatatgttttaataaatacattgggccatcat----atgccaattattttagataaaaaaaa |
208 |
Q |
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| T |
42278259 |
agaataggttttaactacggttaaactgtggctaatgtgatatgttttaataaatacattgggccatcattcatatgccaattattttagataaaaaaaa |
42278358 |
T |
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| Q |
209 |
ttactaatccnnnnnnnnnnn----tcattcaacattaagacttcatcacctacaagtcacaacacagctatgacttagcactgatcaatttcaaacaaa |
304 |
Q |
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| T |
42278359 |
ttactaatccaaaaaaaaaaaaaaatcagtcaacattaagacttcatcacctacaagtcacaacacagctatgacttagcactgatcaatttcacacaaa |
42278458 |
T |
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| Q |
305 |
aaatgcttacttttgttactttgttgcatacataccaattcaaaaatttcttctattctcatgaaaaaagtggaagaaaataatgttagtacaaagattt |
404 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42278459 |
aaatgcttacttttgttactttattgcatacataccaattcaaaaatttcttctattctcatgaaaaaagtggaagaaaataatgttagtacaaagattt |
42278558 |
T |
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| Q |
405 |
agataaactaacaattgagaagataatgtgagtactccaataggataagaaaataagctagttagata |
472 |
Q |
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| T |
42278559 |
agataaactaataattgagaagataatgtgagtactccaataggataagaaaacaagctagttagata |
42278626 |
T |
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