View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4501_high_12 (Length: 471)
Name: NF4501_high_12
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 5350643 - 5351085
Alignment:
| Q |
15 |
atatgaacaatacaacttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaaaatggaagatgtgaaacctgaga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5350643 |
atatgaacaatacaacttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaaaatggaagaagtgaaacctgaga |
5350742 |
T |
|
| Q |
115 |
aaaattctttagaagcctttagtccaagatgggctaccaatacagacctcaagtaagcaaaaatagcactaagaattgacattgcagtgtaaactccaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350743 |
aaaattctttagaagcctttagtccaagatgggctaccaatacagacctcaagtaagcaaaaatagcactaagaattgacattgcagtgtaaactccaac |
5350842 |
T |
|
| Q |
215 |
catccagcctttagtgatgcttggaaattcacttgatagagcaatccaataagatgcaccagctgaaaaagcagcaaaacctaacaatgctattaagctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350843 |
catccagcctttagtgatgcttggaaattcacttgatagagcaatccaataagatgcaccagctgaaaaagcagcaaaacctaacaatgctattaagctt |
5350942 |
T |
|
| Q |
315 |
aaaaactgaagaagcattcccttggagattataatgtaatccaagtacagttcccatccagaacttccaatttctatatattcttcttgagtaagttgtt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350943 |
aaaaactgaagaagcattcccttggagattataatgtaatccaagtacagttcccatccagaacttccaatttctatatattcttcttgagtaagttgtt |
5351042 |
T |
|
| Q |
415 |
gccctccgataattgtctcacatatttcgtcattgttgttttt |
457 |
Q |
| |
|
|||| |||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
5351043 |
gcccgccgatacttgtctcacatatttcatcattgttgttttt |
5351085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 5289332 - 5289393
Alignment:
| Q |
30 |
cttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaa |
91 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
5289332 |
cttactcttgtcaaaatccttccaacaggagttgaatcaaagaaaagcatcggagcattgaa |
5289393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 14948537 - 14948598
Alignment:
| Q |
30 |
cttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaa |
91 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
14948537 |
cttactctagttaaaattcttcccacaggagttgaatcaaagaaaagcattggagcattgaa |
14948598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 15126815 - 15126754
Alignment:
| Q |
30 |
cttactctagtcaaaattcttccaacaggtgttgaatcaaagaatgacatgggagcattgaa |
91 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
15126815 |
cttactctagttaaaattcttcctacaggagttgaatcaaagaaaagcattggagcattgaa |
15126754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University