View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_15 (Length: 419)
Name: NF4501_high_15
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 33878157 - 33878551
Alignment:
| Q |
20 |
attcggacgttcatttcattatgtaagattgcatattatatcacacatcctcccttaaa-ggataaacatgttattgattgtttgattgatgtatgtaac |
118 |
Q |
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| T |
33878157 |
attcggacgttcatttcattatgtaagattgcatattatatcacacatcctcccttaaaaggataaacatgttattgattgtttgattgatgtatgtaac |
33878256 |
T |
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| Q |
119 |
tcactcttagtagtaataataataccattctcatacac--nnnnnnncgattacttttctccatattttttatacttggtacttgttcttgtatttacac |
216 |
Q |
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| T |
33878257 |
tcactcttagtagtaataataataccattctcatacacaatttttttcgattacttttctccatattttttatacttggtacttgttcttgtatttacac |
33878356 |
T |
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| Q |
217 |
aactttattcgactttgagtatttcttgcactgtcagcgtagactcaagagaataaacctataa-nnnnnnnnnnaaaggtgaataaacctataaactta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33878357 |
aactttattcgactttgagtatttcttgcactgtcagcgtagactcaagagaataaacctataattttttttttaaaaggtgaataaacctataaactta |
33878456 |
T |
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| Q |
316 |
gaatccaacaaagatctaatttgaatctttaattggtgatcaatttcatttgttgatgagatatttaattccctttcatcactatatagtataat |
410 |
Q |
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| T |
33878457 |
gaatccaacaaagatctaatttgaatctttaattggtgatcaatttcatttgttgatgagatatttaattccctttcatcactatatagtataat |
33878551 |
T |
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