View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_16 (Length: 415)
Name: NF4501_high_16
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 28 - 399
Target Start/End: Complemental strand, 14581125 - 14580754
Alignment:
| Q |
28 |
aataaataaataacctcgtaaatcttagtgcatgttcctataatattcctggtccaccagtgaccagtggtaagcaaccacttgcaaacagtacatgtca |
127 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |
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| T |
14581125 |
aataaataaaaagcctcgtaaatcttagtgcatgttcctataatattcctggtccaccagtgaccagtggtaagtaaccacttgcaaacggtacatatca |
14581026 |
T |
|
| Q |
128 |
atcagccaccgtagcaccattatcattattacaatagatttcacaagttgagtcaaaaaacaaagttgaattcaaattttccttgtgcactataaaacca |
227 |
Q |
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| T |
14581025 |
aacagccaccgtagcaccattatcattattacaatagatttcacaagttgagtcaaaaaacaaagttgaattcaaattgtccttgtgcactataaaacca |
14580926 |
T |
|
| Q |
228 |
cacactcatccctcacaatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaaggttcagta |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580925 |
cacactcatccctcacaatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaaggttcagta |
14580826 |
T |
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| Q |
328 |
caaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaatt |
399 |
Q |
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| T |
14580825 |
caaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaatt |
14580754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 160 - 399
Target Start/End: Original strand, 14542598 - 14542833
Alignment:
| Q |
160 |
aatagatttcacaagttgagtcaaaaaacaaagttgaattcaaattttccttgtgcactataaaaccacacactcatccctcacaatatcttcaacctca |
259 |
Q |
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| T |
14542598 |
aatagatttcagaaattgagtccaaaaaaatagtagattttaaattgtctttgtgcactataaagccacacactcatccctcacatt--cctcaacctca |
14542695 |
T |
|
| Q |
260 |
aacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactat |
359 |
Q |
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||||||| || |||||||| | | | | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14542696 |
aacatca--tcataacaaaacaaaaaaaataccaaaaaacattttcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatat |
14542793 |
T |
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| Q |
360 |
tgagcaagaaaagaaaccaattttatcatgggatgtaatt |
399 |
Q |
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| T |
14542794 |
tgagcaagaaaagaaaccaattttgtcatgggatgtaatt |
14542833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 14542462 - 14542518
Alignment:
| Q |
28 |
aataaataaataacctcgtaaatcttagtgcatgttcctataatattcctggtccac |
84 |
Q |
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| T |
14542462 |
aataaataataaacctcataaatctcagtgcatgttcatataatatttctggtccac |
14542518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 398
Target Start/End: Complemental strand, 35623182 - 35623085
Alignment:
| Q |
301 |
ttagcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaat |
398 |
Q |
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|||| |||||||||||||||| | || |||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
35623182 |
ttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaat |
35623085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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