View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_17 (Length: 400)
Name: NF4501_high_17
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 8927427 - 8927063
Alignment:
| Q |
19 |
tagtagagtatgtggctatgtgcacatgcgatgttttaagtaaaaaggtgagatttaaaatgcatcagcttcctttcaacatttttttnnnnnnnnnnct |
118 |
Q |
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| T |
8927427 |
tagtagagtaagtggctatgtgcccatgcgatgttttaagtaaaaaggtgcgatttaaaatgcatcagcttcctttcaacattttttttttaaaaaa-ct |
8927329 |
T |
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| Q |
119 |
cggtatctgatccatgattcgaccaaaaatgatgaatttttattaataaagtggtacgaccattttacaatggtctttagggaattcgaactcagcacat |
218 |
Q |
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| T |
8927328 |
cggtatctgatccatgattcgaccaaaaatgatgaatttttattaataaagtggtacgaccattttacaatggtctttagggaattcgaactcagcacat |
8927229 |
T |
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| Q |
219 |
tgaagtagcgtctcaagtgtatctgcacttgaccatgattctttttaatataaaggattgcgacgcgatggttaatgtgatttaaaaccttatgaacatg |
318 |
Q |
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| T |
8927228 |
tgaagtagcgtctcaagtgtatctgcacttgaccatgattctttttaatataaaggattgcgacgcgatggttaatgtgatttaaaatcttatgaacatg |
8927129 |
T |
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| Q |
319 |
tatacattaaattgttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagg |
384 |
Q |
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| T |
8927128 |
tatacattaaattgttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagg |
8927063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 37629658 - 37629607
Alignment:
| Q |
333 |
ttacctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagg |
384 |
Q |
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| T |
37629658 |
ttacctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagg |
37629607 |
T |
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