View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_18 (Length: 396)
Name: NF4501_high_18
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 29324466 - 29324260
Alignment:
| Q |
1 |
tttgtttagggaagtataaagtttgtcaccactnnnnnnnnnnntactttcttccaccatatttgtcaccaatacattaaaattagaaaaatattgtcac |
100 |
Q |
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| T |
29324466 |
tttgtttagggaagtataaagtttgtcaccactaaaaaaaa---tactctcttccaccatatttgtcaccaatacattaaaattagaaaaatattgtcac |
29324370 |
T |
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| Q |
101 |
taatacacgtaaaatcatgtataaaattgaatttaagaatttattacattgttattcaacattatataagaacttaaaaatttgaatgaaaaaatatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29324369 |
taatacacgtaaaatcatgtataaaattgaatttaagaatttattacattgtcattcaacgttatataagaacttaaaaatttgaatgaaaaaatatgaa |
29324270 |
T |
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| Q |
201 |
tttttttcat |
210 |
Q |
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|||||||||| |
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| T |
29324269 |
tttttttcat |
29324260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 29329083 - 29328995
Alignment:
| Q |
256 |
gtcagatctacattgtcacttcaaattcaaannnnnnncttccctcttttcacttatttcaaatcttataatcctataagatactctct |
344 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29329083 |
gtcagatctacattgtcacttcaaattcaaatttttattttccctcttttcacttatttcaaatcttataatcctataagatactctct |
29328995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 29324506 - 29324448
Alignment:
| Q |
338 |
actctctctctacaaaatactctctaccactagaaaaatatttgtttaaggaagtataa |
396 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
29324506 |
actctctctctacaaaatactctcttccactagaaaaatatttgtttagggaagtataa |
29324448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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