View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4501_high_2 (Length: 733)
Name: NF4501_high_2
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 662; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 717
Target Start/End: Original strand, 30407655 - 30408372
Alignment:
| Q |
1 |
cagggctcgttccataggcgccataaggtatgatattattcaaggaagagtaattcatttgagatatggaggaaggtccaaacttcatatcattactgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30407655 |
cagggctcgttccataggcgccataaggtatgatattattcaaggaagagtaattcatttgagatatggaggaaggtccaaacttcatatcattactgaa |
30407754 |
T |
|
| Q |
101 |
atttcccatcaaacttgatctcaggaaatcattgctaaaatcaggttttctatcgaaatgagatggaagagtttgatgagtttcagatttcgggataacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30407755 |
atttcccatcaaacttgatctcaggaaatcattgctaaattcaggttttctatcgaaatgagatggaagagtttgatgagtttcagattttgggataacg |
30407854 |
T |
|
| Q |
201 |
gcactcccaggtatgacattagcacaagtagaagataaaccaacatcacttgagcttatatgattgttatttctagcagcgggaacctcgtggttatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30407855 |
gcactcccaggtatgacattagcacaagtagaagataaaccaacatcacttgagcttatatgattgttatttctagcagcgggaacctcgtggttatgtt |
30407954 |
T |
|
| Q |
301 |
ttccctcataagttgtaagaacatactttagattgtgtgaagccctttccacatgtttccttacggtacatccagcacttgtgcatttgtagtagctcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30407955 |
ttccctcataagttgtaagaacatactttagattgtgtgaagccctttccacatgtttccttacagtacatccagcacttgtgcatttgtagtagctcct |
30408054 |
T |
|
| Q |
401 |
agaagagatggacaagaaaatgttatatgcctactagcttatagtctcaagttaaaaatgcatgaatactataaatcgtaatatcttgatacaattataa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30408055 |
agaagagatggacaagaaaatgttatatgcctactggcttatagtctcaagttaaaaatgcatgaatactatatatcgtaatatcttgatacaattataa |
30408154 |
T |
|
| Q |
501 |
gcattgctttcaatgttgtcaatcgctggttccaagaaacggaagtttgttcaatttctgttatgcagcagccagcagtgctataatgccactatagaca |
600 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408155 |
gcattgctttcaatgttgtcaatcactggttccaagaaacggaagtttgttcaatttctgctatgcagcagccagcagtgctataatgccactatagaca |
30408254 |
T |
|
| Q |
601 |
caatttgaaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatttcgctacattgacagtatttcc-tctaaacagacctgcag |
699 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
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|
| T |
30408255 |
caatttgaaaacattttgtactaattagaatatcacaaacaatagccacttgttcaaatttcgctacattaacagtatttccttctaaacaggcctgcag |
30408354 |
T |
|
| Q |
700 |
atgcataaagaaaaagca |
717 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30408355 |
atgcataaagaaaaagca |
30408372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 247 - 718
Target Start/End: Original strand, 30394283 - 30394757
Alignment:
| Q |
247 |
cacttgagcttatatgattgttatttctagcagcgggaacctcgtggttatgttttccctcataagttgtaagaacatactttagattgtgtgaagccct |
346 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
30394283 |
cacttgagcttgaatgattgttatttctagcagcaggaacctcgtgattatgctttccctcataagttgtaagaacatacttaatattgtgtgaagccct |
30394382 |
T |
|
| Q |
347 |
ttccacatgtttccttacggtacatccagcacttgtgcatttgtagtagctcctagaagagatggacaagaaaatgttatatgcctactagcttatagtc |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| | | |
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|
| T |
30394383 |
ttccacatgtttccttacggtacatccagcacttgtgcatttgtagtagctcctagaagagatggacaaaaaaatgttatacgcatactagcttattgac |
30394482 |
T |
|
| Q |
447 |
tcaagttaaaaatgcatgaatactataaatcgtaatatcttgatacaattataagcattgctttcaatgttgtcaatcgctggttccaagaaacggaagt |
546 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| ||||| | | ||| |||| |||| |
|
|
| T |
30394483 |
tcaagttaaaaaagcatgaatacactatatcgtaatatcttgatacaattataagcattcctttcaatgttgtcgatcgcagactgcaaaaaactaaagt |
30394582 |
T |
|
| Q |
547 |
ttgttcaat-ttctgttatgcagcagccagcagtgctataatgccactatagacacaatttgaaaacattttgtactaattag--catatcacaaacaat |
643 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||| || | ||| |||| ||||||||||||||||||||||||| | | ||||||||||| |
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|
| T |
30394583 |
ttgttcaaaattctgctatgcatcagccagcagtgctataataccgcgatacacactatttgaaaacattttgtactaattatatcttctcacaaacaat |
30394682 |
T |
|
| Q |
644 |
agcaatttgttcaaatttcgctacattgacagtatttcctctaaacagacctgcagatgcataaagaaaaagcaa |
718 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30394683 |
agcaatttgttcaaatttcactacattgacagtatttcctctaaacagatctgcagatgcataaagaaaaagcaa |
30394757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30394061 - 30394267
Alignment:
| Q |
1 |
cagggctcgttccataggcgccataaggtatgatattattcaaggaagagtaattcatttgagatatggaggaaggtccaaacttcatatcattactgaa |
100 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
30394061 |
cagggatcgctccataggcgccataaggtacgatgttattcaaagaagagtaattcatttgagatgaggaggaagctccaaacttcatatcattactgaa |
30394160 |
T |
|
| Q |
101 |
atttcccatcaaacttgatctcaggaaatcattgctaaaatcaggttttctatcgaaatgagatggaagagtttgatgagtttcagatttcgggataacg |
200 |
Q |
| |
|
| |||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||| || |||||||||| | ||||||||| |
|
|
| T |
30394161 |
acttcccatcaaacttgacctcatgaaatcattgccaaaatcaggttttctatcaaaatgagatggaagagttcgacgagtttcagaacttgggataacg |
30394260 |
T |
|
| Q |
201 |
gcactcc |
207 |
Q |
| |
|
|| |||| |
|
|
| T |
30394261 |
gctctcc |
30394267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 660
Target Start/End: Complemental strand, 23747374 - 23747323
Alignment:
| Q |
610 |
aacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatt |
660 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
23747374 |
aacagtttgtactaactagcatatcacagaacaatagctatttgttcaaatt |
23747323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 664
Target Start/End: Original strand, 1110411 - 1110473
Alignment:
| Q |
603 |
atttgaaaacattttgtactaattagcatatcac-aaacaatagcaatttgttcaaatttcgc |
664 |
Q |
| |
|
|||||| |||| || | ||||| ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
1110411 |
atttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaatttcgc |
1110473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 668
Target Start/End: Complemental strand, 13298614 - 13298521
Alignment:
| Q |
576 |
cagtgctataatgccactatagacacaatttgaaaacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatttcgctaca |
668 |
Q |
| |
|
|||||||||| ||||| ||||| ||| |||||| | || |||||||||| |||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
13298614 |
cagtgctatagtgccattatagtcactatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaattccgctaca |
13298521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 603 - 662
Target Start/End: Complemental strand, 55314554 - 55314494
Alignment:
| Q |
603 |
atttgaaaacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatttc |
662 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
55314554 |
atttgataacactttgtactaattagcatatcgcagaacaatagcaatttgttcaaatttc |
55314494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 603 - 667
Target Start/End: Complemental strand, 2732994 - 2732929
Alignment:
| Q |
603 |
atttgaaaacattttgtactaattagcatatcac-aaacaatagcaatttgttcaaatttcgctac |
667 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| | |||||||||| ||||||||||||||| |||| |
|
|
| T |
2732994 |
atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactac |
2732929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 667
Target Start/End: Original strand, 9997224 - 9997253
Alignment:
| Q |
638 |
aacaatagcaatttgttcaaatttcgctac |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9997224 |
aacaatagcaatttgttcaaatttcgctac |
9997253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 660
Target Start/End: Original strand, 11766186 - 11766237
Alignment:
| Q |
608 |
aaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatt |
660 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
11766186 |
aaaacactttgtactaaatagcatatca-aaacaatagctatttgttcaaatt |
11766237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 660
Target Start/End: Original strand, 6025962 - 6026031
Alignment:
| Q |
592 |
ctatagacacaatttgaaaacattttgtactaattagcatatcac-aaacaatagcaatttgttcaaatt |
660 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||| ||||||||| | ||||||| | ||||||||||||| |
|
|
| T |
6025962 |
ctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt |
6026031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 666
Target Start/End: Original strand, 19115101 - 19115164
Alignment:
| Q |
603 |
atttgaaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatttcgcta |
666 |
Q |
| |
|
|||||| ||| ||||||||||| || ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
19115101 |
atttgacaacgttttgtactaaatatcatattgcaaacaacagcaatctgttcaaatttcgcta |
19115164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 668
Target Start/End: Complemental strand, 11257786 - 11257720
Alignment:
| Q |
603 |
atttgaaaacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatttcgctaca |
668 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| | ||||||||| ||||||||| ||| ||||||| |
|
|
| T |
11257786 |
atttgacaacattttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctaca |
11257720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 660
Target Start/End: Original strand, 8282852 - 8282910
Alignment:
| Q |
603 |
atttgaaaacattttgtactaattagcatatcacaa-acaatagcaatttgttcaaatt |
660 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
8282852 |
atttgagaacattttgtaataaatcgcatatcacaagacaatagctatttgttcaaatt |
8282910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 660
Target Start/End: Original strand, 13851011 - 13851067
Alignment:
| Q |
603 |
atttgaaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatt |
660 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||| |||||||| ||| ||||||| |
|
|
| T |
13851011 |
atttgataacattttgtactaaatagtatatcacaaa-aatagcaacttgctcaaatt |
13851067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 659
Target Start/End: Original strand, 41631902 - 41631944
Alignment:
| Q |
618 |
gtactaattagcatatcacaaa-caatagcaatttgttcaaat |
659 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
41631902 |
gtactaaatagcatatcacaaaacaatagcaatttgttcaaat |
41631944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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