View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4501_high_26 (Length: 279)
Name: NF4501_high_26
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 48518065 - 48518302
Alignment:
| Q |
19 |
gttattatgacttgaaacttcatagagttggaagttagccaaggggagacattatgtaattagttgcttaattaatacagaatgtaaccaagttagttag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
48518065 |
gttattatgacttgaaacttcatagagttggaagttagccaaggggagacattatgt---tagttgctta--taa--cagaatgtaaccaagttagttag |
48518157 |
T |
|
| Q |
119 |
tacgttactaattagttataattgttaggcctgcataaggattgtaattgttcatcaaggaaataataaagataatccattctacaatttactctctcta |
218 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48518158 |
tacgttactagttagtgataattgttaggcctacataaggattgtaattgttcatcaaggaaataataaagataatccattctacaatttactctctcta |
48518257 |
T |
|
| Q |
219 |
agttctctcaattctttatataattgccattatattcttgttcat |
263 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48518258 |
aagtctctcaattctttatataattgccactatattcttgttcat |
48518302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University