View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_high_28 (Length: 269)

Name: NF4501_high_28
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_high_28
NF4501_high_28
[»] chr4 (16 HSPs)
chr4 (79-204)||(26695699-26695824)
chr4 (200-257)||(26696197-26696254)
chr4 (25-71)||(4485847-4485893)
chr4 (28-71)||(10082403-10082446)
chr4 (24-71)||(21623432-21623479)
chr4 (28-67)||(55924804-55924843)
chr4 (28-67)||(56088090-56088129)
chr4 (24-67)||(56497621-56497664)
chr4 (25-71)||(3527391-3527437)
chr4 (33-67)||(37208045-37208079)
chr4 (25-75)||(46676512-46676562)
chr4 (24-57)||(11269709-11269742)
chr4 (24-57)||(24785475-24785508)
chr4 (24-57)||(24822758-24822791)
chr4 (25-66)||(26008063-26008104)
chr4 (24-68)||(49949338-49949382)
[»] chr8 (13 HSPs)
chr8 (24-71)||(1244718-1244765)
chr8 (26-75)||(26695320-26695369)
chr8 (24-71)||(9014690-9014737)
chr8 (26-57)||(42982900-42982931)
chr8 (25-67)||(444418-444460)
chr8 (25-67)||(43962038-43962080)
chr8 (26-67)||(7380049-7380090)
chr8 (24-57)||(19488315-19488348)
chr8 (23-71)||(36122523-36122572)
chr8 (25-70)||(38282853-38282898)
chr8 (25-61)||(7987743-7987779)
chr8 (25-57)||(10871812-10871844)
chr8 (25-77)||(31888021-31888073)
[»] chr7 (8 HSPs)
chr7 (25-67)||(5352334-5352376)
chr7 (24-71)||(7872761-7872808)
chr7 (24-67)||(21286355-21286398)
chr7 (26-76)||(2962741-2962791)
chr7 (29-67)||(10461782-10461820)
chr7 (32-61)||(22062434-22062463)
chr7 (33-69)||(7249069-7249105)
chr7 (26-66)||(31525394-31525434)
[»] chr1 (12 HSPs)
chr1 (25-71)||(8269382-8269428)
chr1 (24-71)||(10132457-10132504)
chr1 (32-67)||(26525557-26525592)
chr1 (25-67)||(8210399-8210441)
chr1 (25-67)||(19620581-19620623)
chr1 (26-71)||(45190284-45190329)
chr1 (28-61)||(45224296-45224329)
chr1 (25-66)||(49183179-49183220)
chr1 (25-66)||(52592441-52592482)
chr1 (25-57)||(15764047-15764079)
chr1 (31-67)||(40938485-40938521)
chr1 (25-61)||(47071972-47072008)
[»] chr2 (19 HSPs)
chr2 (22-71)||(29872183-29872232)
chr2 (26-71)||(30045454-30045499)
chr2 (26-71)||(30050617-30050662)
chr2 (26-71)||(30141661-30141706)
chr2 (22-59)||(40797377-40797414)
chr2 (32-79)||(8008033-8008080)
chr2 (28-67)||(27934874-27934913)
chr2 (24-75)||(34903514-34903565)
chr2 (25-67)||(7413203-7413245)
chr2 (25-71)||(30089050-30089096)
chr2 (25-71)||(30125654-30125700)
chr2 (25-75)||(40099397-40099447)
chr2 (24-61)||(8387898-8387935)
chr2 (26-67)||(10156022-10156063)
chr2 (28-73)||(18688929-18688974)
chr2 (26-67)||(19156179-19156220)
chr2 (33-61)||(7640669-7640697)
chr2 (28-64)||(37830721-37830757)
chr2 (24-76)||(42200683-42200735)
[»] chr5 (7 HSPs)
chr5 (26-61)||(34000582-34000617)
chr5 (26-76)||(17338718-17338768)
chr5 (26-71)||(11844453-11844498)
chr5 (25-73)||(1082233-1082281)
chr5 (25-61)||(2053037-2053073)
chr5 (33-73)||(6327695-6327735)
chr5 (25-61)||(39914912-39914948)
[»] chr3 (12 HSPs)
chr3 (24-67)||(28130947-28130990)
chr3 (24-67)||(35863826-35863869)
chr3 (24-75)||(45096023-45096074)
chr3 (26-71)||(1744005-1744050)
chr3 (26-67)||(12131688-12131729)
chr3 (25-66)||(28266722-28266763)
chr3 (28-73)||(38869535-38869580)
chr3 (23-67)||(1149081-1149125)
chr3 (26-62)||(10513639-10513675)
chr3 (25-57)||(39822186-39822218)
chr3 (25-57)||(39869821-39869853)
chr3 (25-77)||(46469272-46469324)
[»] chr6 (4 HSPs)
chr6 (33-71)||(23507413-23507451)
chr6 (25-67)||(26400869-26400911)
chr6 (26-71)||(23629852-23629897)
chr6 (26-66)||(9923246-9923286)
[»] scaffold0565 (1 HSPs)
scaffold0565 (33-61)||(6990-7018)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 26695699 - 26695824
Alignment:
Q  79 ataggtcaaatatttaaacctaatggtacttttgtaatcacgcatattattatttcaagtcaaattttatagtcactatcacatatatttaacttacgct 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26695699 ataggtcaaatatttaaacctaatggtacttttgtaatcacgcatattattatttcaagtcaaattttatagtcactatcacatatatttaacttacgct 26695798  T
Q  179 aaggagattatgatcaacacacctta 204  Q
    ||||||||||||||||||||||||||    
T  26695799 aaggagattatgatcaacacacctta 26695824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 26696197 - 26696254
Alignment:
Q  200 ccttaaagtgtgtttttcttcccaattttacacattccatttactcatgcatgccttt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26696197 ccttaaagtgtgtttttcttcccaattttacacattccatttactcatgcatgccttt 26696254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 4485847 - 4485893
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  4485847 gaccttgcatatactatgtattgtccttatcaattgaactaagttca 4485893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 10082446 - 10082403
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||    
T  10082446 cttgtatatattatgtattgtccctaccaactgagctaagttca 10082403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 21623432 - 21623479
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||| |||||||||| ||||||| |||||| |||||||||||||    
T  21623432 agaccttgcatatattatgcattgtccctaccaactgaactaagttca 21623479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 55924804 - 55924843
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  55924804 cttgcatatattatgtattgtccttaccaattgagctaag 55924843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 56088090 - 56088129
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  56088090 cttgcatatattatgtattgtccttaccaattgagctaag 56088129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 56497621 - 56497664
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||| |||||||||| |||||||||||||||||| |||||    
T  56497621 agaccttgcatatattatgcattgtccttaccaattgagctaag 56497664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 3527437 - 3527391
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||||||||||||||||||||| ||| || ||| |||||||||    
T  3527437 gaccttgtatatattatgtattgtccctactaactgagctaagttca 3527391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 37208079 - 37208045
Alignment:
Q  33 atatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||||||||||||| |||||||||||||||||    
T  37208079 atatattatgtattgtctttaccaattgaactaag 37208045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 46676512 - 46676562
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttcatggg 75  Q
    ||||||| |||||||||| |||||||||||||| ||| ||||| |||||||    
T  46676512 gaccttgcatatattatgcattgtccttaccaactgagctaagctcatggg 46676562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 11269742 - 11269709
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaa 57  Q
    |||||||| |||||||||||||||||||||||||    
T  11269742 agaccttgcatatattatgtattgtccttaccaa 11269709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 24785475 - 24785508
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaa 57  Q
    ||||||||||||||||||| ||||||||||||||    
T  24785475 agaccttgtatatattatgcattgtccttaccaa 24785508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 24822791 - 24822758
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaa 57  Q
    ||||||||||||||||||| ||||||||||||||    
T  24822791 agaccttgtatatattatgcattgtccttaccaa 24822758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 26008063 - 26008104
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaa 66  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  26008063 gaccttgcatatattatgcattgtctttaccaattgaactaa 26008104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 49949382 - 49949338
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagt 68  Q
    |||||||| |||||||||| |||||||||||||| ||| ||||||    
T  49949382 agaccttgcatatattatgcattgtccttaccaactgagctaagt 49949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 1244718 - 1244765
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||    
T  1244718 agaccttgtatatattatgcattgtccttaccaactgagctaagttca 1244765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 26695320 - 26695369
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttcatggg 75  Q
    |||||| |||||||||||||| |||||| ||||||| |||||||||||||    
T  26695320 accttgcatatattatgtattatccttaacaattgagctaagttcatggg 26695369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 9014690 - 9014737
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||| |||||||||||||||||  |||||||||| |||||||||    
T  9014690 agaccttgcatatattatgtattgtcgctaccaattgagctaagttca 9014737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 57
Target Start/End: Complemental strand, 42982931 - 42982900
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaa 57  Q
    ||||||||||||||||||||||||||||||||    
T  42982931 accttgtatatattatgtattgtccttaccaa 42982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 444460 - 444418
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||| |||||||||| |||||||||||||||||| |||||    
T  444460 gaccttgcatatattatgcattgtccttaccaattgagctaag 444418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 43962038 - 43962080
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||    
T  43962038 gaccttgcatatattatgtattgtccttaccaactgagctaag 43962080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 7380090 - 7380049
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||||||||||||||||||||| || ||||||| |||||    
T  7380090 accttgtatatattatgtattgtccataacaattgagctaag 7380049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 19488348 - 19488315
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaa 57  Q
    ||||||||||||||||||| ||||||||||||||    
T  19488348 agaccttgtatatattatgcattgtccttaccaa 19488315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 36122572 - 36122523
Alignment:
Q  23 tagaccttgtatatattatgtatt-gtccttaccaattgaactaagttca 71  Q
    ||||||||| |||||||||| ||| |||| ||||||||||||||||||||    
T  36122572 tagaccttgcatatattatgcatttgtccctaccaattgaactaagttca 36122523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 38282853 - 38282898
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttc 70  Q
    ||||||||||||| |||| |||||||||||||| ||| ||||||||    
T  38282853 gaccttgtatatactatgcattgtccttaccaactgagctaagttc 38282898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 7987743 - 7987779
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattga 61  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  7987743 gaccttgcatatattatgtattgtccttagcaattga 7987779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 10871812 - 10871844
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaa 57  Q
    ||||||| |||||||||||||||||||||||||    
T  10871812 gaccttgcatatattatgtattgtccttaccaa 10871844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 31888073 - 31888021
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttcatgggaa 77  Q
    ||||||| |||||||||  |||||||||||||| ||| ||||||||| |||||    
T  31888073 gaccttgcatatattatccattgtccttaccaactgagctaagttcacgggaa 31888021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 5352376 - 5352334
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  5352376 gaccttgtatatattatgtattgtccttaccaactgagctaag 5352334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 7872761 - 7872808
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||| |||||||||| |||||||||||||| ||| |||||||||    
T  7872761 agaccttgcatatattatgcattgtccttaccaactgagctaagttca 7872808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 21286398 - 21286355
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||| |||||||||||||||||| |||||||||| |||||    
T  21286398 agaccttgcatatattatgtattgtccataccaattgagctaag 21286355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 2962741 - 2962791
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttcatggga 76  Q
    |||||| |||||||||| ||| || ||||||||||||||||||||| ||||    
T  2962741 accttgcatatattatgcattatctttaccaattgaactaagttcacggga 2962791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 10461782 - 10461820
Alignment:
Q  29 ttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  10461782 ttgtatatattatgcattgtccttatcaattgaactaag 10461820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 22062434 - 22062463
Alignment:
Q  32 tatatattatgtattgtccttaccaattga 61  Q
    ||||||||||||||||||||||||||||||    
T  22062434 tatatattatgtattgtccttaccaattga 22062463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 7249069 - 7249105
Alignment:
Q  33 atatattatgtattgtccttaccaattgaactaagtt 69  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7249069 atatattatgtattgtccttaccaactgatctaagtt 7249105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 31525394 - 31525434
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaa 66  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  31525394 accttgtatatattatatattgttcataccaattgaactaa 31525434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 8269382 - 8269428
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  8269382 gaccttgcatatattatgtattgtccttaccaactgagctaagttca 8269428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 10132457 - 10132504
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||| |||||||||| |||||||||||||| ||| |||||||||    
T  10132457 agaccttgcatatattatgcattgtccttaccaactgatctaagttca 10132504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 26525557 - 26525592
Alignment:
Q  32 tatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26525557 tatatattatgtattgtccttaccaattgaattaag 26525592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 8210399 - 8210441
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||||||||||||| |||||||||||||| | |||||||    
T  8210399 gaccttgtatatattatgcattgtccttaccaactaaactaag 8210441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 19620623 - 19620581
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||    
T  19620623 gaccttgcatatattatgtattgtccttaccaactgagctaag 19620581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 45190284 - 45190329
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||| |||||||||| ||||||| |||||| |||||||||||||    
T  45190284 accttgcatatattatgcattgtccataccaactgaactaagttca 45190329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 45224296 - 45224329
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattga 61  Q
    ||||||||||||||| ||||||||||||||||||    
T  45224296 cttgtatatattatgaattgtccttaccaattga 45224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 49183220 - 49183179
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaa 66  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||    
T  49183220 gaccttgcatatattatgtattgtccttaccaactgagctaa 49183179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 52592441 - 52592482
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaa 66  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||    
T  52592441 gaccttgcatatattatatattgtccttaccaattgagctaa 52592482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 15764079 - 15764047
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaa 57  Q
    |||||||||||||||||| ||||||||||||||    
T  15764079 gaccttgtatatattatgcattgtccttaccaa 15764047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 40938521 - 40938485
Alignment:
Q  31 gtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||||||||||||||| |||||||||| |||||    
T  40938521 gtatatattatgtattgtccataccaattgagctaag 40938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 47071972 - 47072008
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattga 61  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  47071972 gaccttgcatatattatgtattgttcttaccaattga 47072008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 29872183 - 29872232
Alignment:
Q  22 ttagaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||||| |||||||||||||||| | |||||| |||||||||||||    
T  29872183 ttagaccttgcatatattatgtattgttcataccaactgaactaagttca 29872232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 30045499 - 30045454
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||    
T  30045499 accttgtatatattatgcattgtccctaccaattgagctaagttca 30045454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 30050662 - 30050617
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||    
T  30050662 accttgtatatattatgcattgtccctaccaattgagctaagttca 30050617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 30141706 - 30141661
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||    
T  30141706 accttgtatatattatgcattgtccctaccaattgagctaagttca 30141661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 40797414 - 40797377
Alignment:
Q  22 ttagaccttgtatatattatgtattgtccttaccaatt 59  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  40797414 ttagaccttgtatatattatgcattgtccttaccaatt 40797377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 8008080 - 8008033
Alignment:
Q  32 tatatattatgtattgtccttaccaattgaactaagttcatgggaata 79  Q
    |||||||||||||||||||||| ||| ||| ||||||||| |||||||    
T  8008080 tatatattatgtattgtccttatcaactgagctaagttcacgggaata 8008033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 27934874 - 27934913
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  27934874 cttgtatatattatgtattgtccttaccaactgagctaag 27934913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 34903565 - 34903514
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttcatggg 75  Q
    |||||||| |||||||||| | |||||||||||| ||||||||| |||||||    
T  34903565 agaccttgcatatattatgcactgtccttaccaactgaactaagctcatggg 34903514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 7413203 - 7413245
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||||||||||||| |||||||||||||| ||| |||||    
T  7413203 gaccttgtatatattatgcattgtccttaccaactgagctaag 7413245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 30089096 - 30089050
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||||||||||||| ||||||| |||||| ||| |||||||||    
T  30089096 gaccttgtatatattatgcattgtccctaccaactgagctaagttca 30089050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 30125700 - 30125654
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||||||||||||||| ||||||| |||||| ||| |||||||||    
T  30125700 gaccttgtatatattatgcattgtccctaccaactgagctaagttca 30125654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 40099397 - 40099447
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttcatggg 75  Q
    ||||||| |||||||||| |||||||||||||| ||| ||||| |||||||    
T  40099397 gaccttgcatatattatgcattgtccttaccaactgagctaagctcatggg 40099447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 8387898 - 8387935
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattga 61  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  8387898 agaccttgaatatattatgcattgtccttaccaattga 8387935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 10156063 - 10156022
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||| ||||||||||||||||||||||||| ||| |||||    
T  10156063 accttgcatatattatgtattgtccttaccaactgagctaag 10156022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 18688929 - 18688974
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattgaactaagttcatg 73  Q
    ||||||| |||||||||||||| |||||||||||  ||||||||||    
T  18688929 cttgtatgtattatgtattgtctttaccaattgagttaagttcatg 18688974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 19156179 - 19156220
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||| |||||||||||| |||||||||||||||| |||||    
T  19156179 accttgcatatattatgtactgtccttaccaattgagctaag 19156220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 7640697 - 7640669
Alignment:
Q  33 atatattatgtattgtccttaccaattga 61  Q
    |||||||||||||||||||||||||||||    
T  7640697 atatattatgtattgtccttaccaattga 7640669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 37830757 - 37830721
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattgaact 64  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  37830757 cttgtatatattatgtattgtccctaccaactgaact 37830721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 42200735 - 42200683
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttcatggga 76  Q
    |||||||| ||||||||||||||||| ||||||| |||  ||| |||||||||    
T  42200735 agaccttgcatatattatgtattgtctttaccaactgagttaacttcatggga 42200683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 34000617 - 34000582
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattga 61  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34000617 accttgtatatattatgtattgtccataccaattga 34000582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 17338718 - 17338768
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttcatggga 76  Q
    |||||| ||||||||||||||||| ||||||||||| ||||| ||| ||||    
T  17338718 accttgcatatattatgtattgtctttaccaattgagctaagctcacggga 17338768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 11844453 - 11844498
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||| |||||||||| |||||||||||||| ||| |||||||||    
T  11844453 accttgcatatattatgcattgtccttaccaactgagctaagttca 11844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 1082233 - 1082281
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttcatg 73  Q
    |||||||||||||||||  ||||||| |||||| ||||||||| |||||    
T  1082233 gaccttgtatatattatacattgtccctaccaactgaactaagctcatg 1082281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 2053073 - 2053037
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattga 61  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  2053073 gaccttgtatattttatgcattgtccttaccaattga 2053037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 6327735 - 6327695
Alignment:
Q  33 atatattatgtattgtccttaccaattgaactaagttcatg 73  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  6327735 atatattatgcattgtccttactaattgagctaagttcatg 6327695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 39914948 - 39914912
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattga 61  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  39914948 gaccttgcatatattatgcattgtccttaccaattga 39914912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 28130947 - 28130990
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||    
T  28130947 agaccttgcatatattatgcattgtccttaccatttgaactaag 28130990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 35863826 - 35863869
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||    
T  35863826 agaccttgcatatattatgtattgtccttaccaactgagctaag 35863869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 45096074 - 45096023
Alignment:
Q  24 agaccttgtatatattatgtattgtccttaccaattgaactaagttcatggg 75  Q
    |||||||| |||||||||| |||||||||| ||| ||| |||||||||||||    
T  45096074 agaccttgcatatattatgcattgtccttatcaactgagctaagttcatggg 45096023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 1744005 - 1744050
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||| |||||||||||||||||| |||||| |||| ||||||||    
T  1744005 accttgcatatattatgtattgtccataccaactgaattaagttca 1744050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 12131688 - 12131729
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||||||||||||| ||||||  ||||||||||||||||    
T  12131688 accttgtatatattatgcattgtctataccaattgaactaag 12131729  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 28266763 - 28266722
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaa 66  Q
    ||||||| |||||||||| |||||||||||||| ||||||||    
T  28266763 gaccttgcatatattatgcattgtccttaccaactgaactaa 28266722  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 38869535 - 38869580
Alignment:
Q  28 cttgtatatattatgtattgtccttaccaattgaactaagttcatg 73  Q
    ||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  38869535 cttgtatatattatgcattgttcttaccaactgagctaagttcatg 38869580  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 1149081 - 1149125
Alignment:
Q  23 tagaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||||| |||||||||| |||||||||||||| ||| |||||    
T  1149081 tagaccttgcatatattatgcattgtccttaccaactgagctaag 1149125  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 10513675 - 10513639
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaa 62  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  10513675 accttgtatatattatgcattgtccttaccaactgaa 10513639  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 39822186 - 39822218
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaa 57  Q
    |||||||||||||||||| ||||||||||||||    
T  39822186 gaccttgtatatattatgcattgtccttaccaa 39822218  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 39869821 - 39869853
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaa 57  Q
    |||||||||||||||||| ||||||||||||||    
T  39869821 gaccttgtatatattatgcattgtccttaccaa 39869853  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 46469324 - 46469272
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaagttcatgggaa 77  Q
    ||||||| |||||||||| |||||||||||||| ||| ||||| ||| |||||    
T  46469324 gaccttgaatatattatgcattgtccttaccaactgagctaagctcacgggaa 46469272  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 23507413 - 23507451
Alignment:
Q  33 atatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  23507413 atattttatgtattgtccttaccaactgaactaagttca 23507451  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 26400911 - 26400869
Alignment:
Q  25 gaccttgtatatattatgtattgtccttaccaattgaactaag 67  Q
    ||||||| |||||||||||||||||| |||||||||| |||||    
T  26400911 gaccttgcatatattatgtattgtccataccaattgagctaag 26400869  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 23629852 - 23629897
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaagttca 71  Q
    |||||| |||||||||| |||||| ||||||||||| |||||||||    
T  23629852 accttgcatatattatgcattgtcattaccaattgagctaagttca 23629897  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 9923286 - 9923246
Alignment:
Q  26 accttgtatatattatgtattgtccttaccaattgaactaa 66  Q
    ||||||||||||||||| |||||||||| ||||||| ||||    
T  9923286 accttgtatatattatgcattgtccttatcaattgagctaa 9923246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 6990 - 7018
Alignment:
Q  33 atatattatgtattgtccttaccaattga 61  Q
    |||||||||||||||||||||||||||||    
T  6990 atatattatgtattgtccttaccaattga 7018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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