View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_high_3 (Length: 713)

Name: NF4501_high_3
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_high_3
NF4501_high_3
[»] chr5 (8 HSPs)
chr5 (18-697)||(29712534-29713213)
chr5 (273-503)||(29687640-29687870)
chr5 (253-494)||(29695721-29695962)
chr5 (298-367)||(42562726-42562795)
chr5 (542-632)||(29696064-29696154)
chr5 (549-618)||(42562478-42562547)
chr5 (302-364)||(1812043-1812105)
chr5 (303-364)||(178638-178699)
[»] chr1 (4 HSPs)
chr1 (303-401)||(24309796-24309894)
chr1 (289-364)||(24322067-24322142)
chr1 (302-427)||(24340032-24340157)
chr1 (303-361)||(24415456-24415514)
[»] chr8 (5 HSPs)
chr8 (302-425)||(15348480-15348603)
chr8 (279-365)||(12199902-12199988)
chr8 (279-365)||(12444330-12444416)
chr8 (279-365)||(12194896-12194982)
chr8 (279-365)||(12439324-12439410)
[»] chr4 (33 HSPs)
chr4 (285-400)||(48156789-48156904)
chr4 (302-413)||(48862859-48862973)
chr4 (306-425)||(7774166-7774285)
chr4 (302-427)||(48735647-48735775)
chr4 (308-425)||(7877344-7877461)
chr4 (309-397)||(7904657-7904745)
chr4 (288-398)||(45366582-45366695)
chr4 (286-397)||(48148047-48148161)
chr4 (285-400)||(45372419-45372534)
chr4 (309-392)||(49044599-49044682)
chr4 (306-398)||(7771026-7771118)
chr4 (308-368)||(49048993-49049053)
chr4 (306-400)||(7907947-7908041)
chr4 (303-365)||(33134223-33134285)
chr4 (302-400)||(48891027-48891125)
chr4 (302-399)||(7765239-7765336)
chr4 (304-364)||(48870162-48870222)
chr4 (304-364)||(48885848-48885908)
chr4 (306-365)||(7813102-7813161)
chr4 (306-365)||(7822591-7822650)
chr4 (309-400)||(49041500-49041591)
chr4 (306-398)||(7789711-7789803)
chr4 (309-396)||(7238086-7238173)
chr4 (306-365)||(7800259-7800318)
chr4 (310-365)||(33133663-33133718)
chr4 (302-413)||(48170935-48171049)
chr4 (312-397)||(48875474-48875559)
chr4 (309-405)||(37827351-37827447)
chr4 (304-367)||(48898342-48898405)
chr4 (306-361)||(48902572-48902627)
chr4 (544-581)||(7771261-7771298)
chr4 (306-399)||(7786065-7786158)
chr4 (544-581)||(7904890-7904927)
[»] scaffold0508 (1 HSPs)
scaffold0508 (302-401)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (302-404)||(21015394-21015496)
[»] chr3 (4 HSPs)
chr3 (302-365)||(11024934-11024997)
chr3 (306-632)||(47452040-47452363)
chr3 (306-365)||(11006359-11006418)
chr3 (302-365)||(11015922-11015985)


Alignment Details
Target: chr5 (Bit Score: 664; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 18 - 697
Target Start/End: Complemental strand, 29713213 - 29712534
Alignment:
Q  18 aggaagagcaagatacttccctctcatactcctaaaatattggtgatagactctttcaaaggagacataactttcaaaacgaattcatgagcggaagtag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29713213 aggaagagcaagatacttccctctcatactcctaaaatattggtgatagactctttcaaaggagacataactttcaaaaccaattcatgagcggaagtag 29713114  T
Q  118 gaataaaatataaatggcaaatgcgtctttatcatcctaccaacatagtaaagggttgaaaacctaacttaaaaatcaaagtgatccgaaacaatattgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29713113 gaataaaatataaatggcaaatgcgtctttatcatcctaccaacatagtaaagggttgaaaacctaacctaaaaatcaaagtgatccgaaacaatattgg 29713014  T
Q  218 caaaggaggaaacgtgtgaatggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29713013 caaaggaggaaacgtgtgaatggagacgatgaagaagacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtct 29712914  T
Q  318 cttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaaacacacgctc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29712913 cttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttaccgccaaaacacacgctc 29712814  T
Q  418 ctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatattaattt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712813 ctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatattaattt 29712714  T
Q  518 tttgcttccacagtcttttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatcc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712713 tttgcttccacagtcttttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatcc 29712614  T
Q  618 actggagttcacaaatatataccaaactctcttattgattgcaatttagatgcatatcatttatatggttttgggtatga 697  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712613 actggagttcacaaatatataccaaattctcttattgattgcaatttagatgcatatcatttatatggttttgggtatga 29712534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 273 - 503
Target Start/End: Original strand, 29687640 - 29687870
Alignment:
Q  273 attgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctg 372  Q
    ||||| || ||||||||||||||| ||| |||||| |||||||||||||| || |||||||| ||||||||||  ||||||||||| || |||||| ||     
T  29687640 attgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctc 29687739  T
Q  373 atttcgcaaattcacattttcaacttactgccaaaacacacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaac 472  Q
    | || |||||||| |||||||||||||| |||||  ||||| ||||||||||||| || |||| |||| |||| |||||||||||||| ||||| |||||    
T  29687740 actttgcaaattctcattttcaacttaccgccaatgcacacactcctagaattctgttcataaatccagatcttgaatctctatctatagattttgaaac 29687839  T
Q  473 atcactctacgatgatagtgcttcctattca 503  Q
    ||| ||  |||||||||||||||| ||||||    
T  29687840 atcgcttcacgatgatagtgcttcttattca 29687870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 253 - 494
Target Start/End: Original strand, 29695721 - 29695962
Alignment:
Q  253 agacagagcaatatctatctattgagttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggtt 352  Q
    ||||||||  ||||||  || |||||||||||||||||||||| |||| |||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  29695721 agacagagacatatcttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggtt 29695820  T
Q  353 ttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaaacacacgctcctagaattctattgataactccaaatctggaatct 452  Q
     |||||||| |||||| || | || |||||||||||||||||||||||  ||   |||||| |   ||||||| | |||||||||||| ||||  |||||    
T  29695821 atctcttatatctcaacctcactttgcaaattcacattttcaacttaccaccgctacacacacgaatagaattatgttgataactccatatcttcaatct 29695920  T
Q  453 ctatctattgatttggaaacatcactctacgatgatagtgct 494  Q
    |||||||| ||| | |||  ||| ||  ||||||||||||||    
T  29695921 ctatctatagatcttgaattatcgcttaacgatgatagtgct 29695962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 42562795 - 42562726
Alignment:
Q  298 taatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 367  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||  ||||||||||| ||||||||    
T  42562795 taatgttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctctca 42562726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 542 - 632
Target Start/End: Original strand, 29696064 - 29696154
Alignment:
Q  542 acttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaa 632  Q
    ||||||| ||||||||||||||||||| |||||||||||||  |||   ||| | |||||| |||||||||||||||| ||| ||||||||    
T  29696064 acttgattttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaa 29696154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 618
Target Start/End: Complemental strand, 42562547 - 42562478
Alignment:
Q  549 attaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatcca 618  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||  |||  ||||||||||||||||    
T  42562547 attaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatcca 42562478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 1812043 - 1812105
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 364  Q
    |||||| ||||||| ||| || |||| ||| || |||||||||||||||||||||||||||||    
T  1812043 gttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 178638 - 178699
Alignment:
Q  303 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 364  Q
    ||||| || |||||||||||||||||||| || ||||||||||  ||||| ||||| |||||    
T  178638 ttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 24309796 - 24309894
Alignment:
Q  303 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 401  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||| | || ||||||||||||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttact 24309894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 24322067 - 24322142
Alignment:
Q  289 aaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 364  Q
    |||||||| ||| ||| | |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 302 - 427
Target Start/End: Original strand, 24340032 - 24340157
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 401  Q
    ||||||||| |||||||||||||||||||| |  |||||||||| ||||||||| ||||||||| |   | | || ||||||||||| |||||| |||||    
T  24340032 gttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaattcacactttcaagttact 24340131  T
Q  402 gccaaaacacacgctcctagaattct 427  Q
    ||   ||||||| ||| |||||||||    
T  24340132 gctgcaacacacactcttagaattct 24340157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 24415456 - 24415514
Alignment:
Q  303 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 361  Q
    |||||||| |||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 425
Target Start/End: Original strand, 15348480 - 15348603
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 401  Q
    ||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||| |  || | ||||||||||||||||||||| ||||     
T  15348480 gttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 15348579  T
Q  402 gccaaaacacacgctcctagaatt 425  Q
    |||  ||||||| ||| |||||||    
T  15348580 gccgcaacacacactcgtagaatt 15348603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 12199902 - 12199988
Alignment:
Q  279 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12199902 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12199988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 12444330 - 12444416
Alignment:
Q  279 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| || |||||||||| |||||||||||||||||||    
T  12444330 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctct 12444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 12194896 - 12194982
Alignment:
Q  279 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12194896 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12194982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 12439324 - 12439410
Alignment:
Q  279 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  12439324 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 12439410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 285 - 400
Target Start/End: Complemental strand, 48156904 - 48156789
Alignment:
Q  285 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaatt 384  Q
    |||||||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||  |  || |||| |||||||    
T  48156904 attcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaatt 48156805  T
Q  385 cacattttcaacttac 400  Q
    | ||||||||| ||||    
T  48156804 ctcattttcaaattac 48156789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 48862859 - 48862973
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaattcacattttcaactt 398  Q
    |||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||  || || | || |||||||||||||||||||||    
T  48862859 gttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaactt 48862958  T
Q  399 actgccaaaacacac 413  Q
    ||||||  |||||||    
T  48862959 actgccgcaacacac 48862973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 306 - 425
Target Start/End: Complemental strand, 7774285 - 7774166
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 405  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||| |  |  |||| |||||||||||||||||||| ||  |||    
T  7774285 ccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccacca 7774186  T
Q  406 aaacacacgctcctagaatt 425  Q
     ||| ||| |||||||||||    
T  7774185 caacgcacactcctagaatt 7774166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 302 - 427
Target Start/End: Complemental strand, 48735775 - 48735647
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc---tcaatctgatttcgcaaattcacattttcaactt 398  Q
    |||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||   | |  ||||||| ||||||||||||||| || ||    
T  48735775 gttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaattcacattttgaaatt 48735676  T
Q  399 actgccaaaacacacgctcctagaattct 427  Q
    || |||| ||| ||| ||| |||||||||    
T  48735675 accgccataacccacactcgtagaattct 48735647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 308 - 425
Target Start/End: Original strand, 7877344 - 7877461
Alignment:
Q  308 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgccaaa 407  Q
    ||||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||| |  |  |||| |||||||||||||||||||| ||  ||| |    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccaccaca 7877443  T
Q  408 acacacgctcctagaatt 425  Q
    || ||| |||||||||||    
T  7877444 acgcacactcctagaatt 7877461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 309 - 397
Target Start/End: Original strand, 7904657 - 7904745
Alignment:
Q  309 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaact 397  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |  || | || ||||||||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 45366695 - 45366582
Alignment:
Q  288 caaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctc---aatctgatttcgcaaatt 384  Q
    ||||||||  ||| |||||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||   | ||  | || |||||||    
T  45366695 caaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaatt 45366596  T
Q  385 cacattttcaactt 398  Q
    ||||||||||||||    
T  45366595 cacattttcaactt 45366582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 286 - 397
Target Start/End: Complemental strand, 48148161 - 48148047
Alignment:
Q  286 ttcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaa 382  Q
    |||||||||||| || |||||| ||||||||||||||||||||||| || || |||||||  ||||||||||||||||||||  || || | ||||||||    
T  48148161 ttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaa 48148062  T
Q  383 ttcacattttcaact 397  Q
    |||||||||| ||||    
T  48148061 ttcacattttgaact 48148047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 285 - 400
Target Start/End: Complemental strand, 45372534 - 45372419
Alignment:
Q  285 attcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaatt 384  Q
    |||||||| ||  ||| ||| ||||||||||||||||| |||||||| || ||||||||||  ||||||||| |||||||| |  || |||| |||||||    
T  45372534 attcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcattttgcaaatt 45372435  T
Q  385 cacattttcaacttac 400  Q
    ||||||||||| ||||    
T  45372434 cacattttcaaattac 45372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 309 - 392
Target Start/End: Complemental strand, 49044682 - 49044599
Alignment:
Q  309 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacatttt 392  Q
    |||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |  | || |||||||||||||||    
T  49044682 gtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacatttt 49044599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 7771026 - 7771118
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactt 398  Q
    |||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||| |  || | || | |||||||||||||||||||    
T  7771026 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaactt 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 49049053 - 49048993
Alignment:
Q  308 ggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaa 368  Q
    ||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaa 49048993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 7907947 - 7908041
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 400  Q
    ||||||||||||||||  ||||||||||  ||| |||||| |||||||||||||||||||    |  |||| |||||||||||||||||||||||    
T  7907947 ccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaacttac 7908041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 33134285 - 33134223
Alignment:
Q  303 ttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    ||||||||||||||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctct 33134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 400
Target Start/End: Original strand, 48891027 - 48891125
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 400  Q
    |||| |||| ||||||||||| |||||||| |||||||||||||  |||||||||||| ||||  |  || |||| |||||||| ||||||||||||||    
T  48891027 gttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaacttac 48891125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 7765239 - 7765336
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 399  Q
    ||||||||||||||||||  |   |||||||||| |||||||||||||||||||| |||||||| |  || | || |||||||||||||| |||||||    
T  7765239 gttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacatttccaactta 7765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 48870162 - 48870222
Alignment:
Q  304 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 364  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48870162 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 48885848 - 48885908
Alignment:
Q  304 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctc 364  Q
    |||||||||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||    
T  48885848 taccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 7813102 - 7813161
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7813102 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7813161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 7822591 - 7822650
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||| |||||| ||||||||||| |||||||| | |||||||||||||||||||    
T  7822591 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctct 7822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 49041591 - 49041500
Alignment:
Q  309 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttac 400  Q
    ||||||||||||||| ||||||| |||||||| ||||  |||||||||||||||||| |  |  |||| |||||||| |||||| |||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttac 49041500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 7789711 - 7789803
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactt 398  Q
    |||||||||||||||||  ||||||| |||||||||||||  ||||||||| |||||||  |  || | || | |||||||||||||||||||    
T  7789711 ccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaactt 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 7238173 - 7238086
Alignment:
Q  309 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaac 396  Q
    ||||||||||||||  ||||||| || ||||||||||  |||||||||||||||||| |  || | || |||||||||||||| ||||    
T  7238173 gtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaac 7238086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 7800259 - 7800318
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||| |||||| ||||||||||| |||||||| | ||||||||||||| |||||    
T  7800259 ccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctct 7800318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 33133663 - 33133718
Alignment:
Q  310 tgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||||||||||||||| | | |||||||| | ||||||||||||||||||    
T  33133663 tgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctct 33133718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 48171049 - 48170935
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca--at-ctgatttcgcaaattcacattttcaactt 398  Q
    |||| |||||||||||||| | |||||||| || ||||||||||  |||||| |||||||||||||  || || | || |||||||| ||||||||| ||    
T  48171049 gttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttcaaatt 48170950  T
Q  399 actgccaaaacacac 413  Q
    || ||| ||||||||    
T  48170949 accgcctaaacacac 48170935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 48875474 - 48875559
Alignment:
Q  312 aagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaact 397  Q
    |||||||| ||||||||||| |||||||| ||||  ||||||||||| |||||  || |  ||||  |||||||||||||||||||    
T  48875474 aagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctccgaaccccattttacaaattcacattttcaact 48875559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 37827447 - 37827351
Alignment:
Q  309 gtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 405  Q
    ||||||||||||||  |||| |  ||||||||||||| ||||||  ||||||| ||| |  | || || ||||||||||||||||||||||| ||||    
T  37827447 gtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggcca 37827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 48898342 - 48898405
Alignment:
Q  304 taccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctca 367  Q
    |||| |||||||||||||  ||||||||||| ||||||||||  ||||| || |||||||||||    
T  48898342 tacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctca 48898405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 48902572 - 48902627
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttat 361  Q
    ||||| |||||||| ||||||||||| || ||||||||||  ||||||||||||||    
T  48902572 ccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttat 48902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 581
Target Start/End: Original strand, 7771261 - 7771298
Alignment:
Q  544 ttgatattaaaggttcgtgtagagggtttatacttttg 581  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771261 ttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 7786065 - 7786158
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 399  Q
    |||||||| ||||||||    ||||| |||||||||||| ||||| ||||| |||||||| |  || | || |||||||||||||| |||||||    
T  7786065 ccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacatttccaactta 7786158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 581
Target Start/End: Original strand, 7904890 - 7904927
Alignment:
Q  544 ttgatattaaaggttcgtgtagagggtttatacttttg 581  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7904890 ttgaaattagaggttcgtgtagagggtttatacttttg 7904927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 11880 - 11979
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 401  Q
    ||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||||||||||| |   | | || ||||||||||||||||||||||||    
T  11880 gttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttact 11979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 404
Target Start/End: Original strand, 21015394 - 21015496
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttact 401  Q
    ||||||||| | ||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||| |  | || |||| |||||||||| || |||||    
T  21015394 gttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttgaaattact 21015493  T
Q  402 gcc 404  Q
    |||    
T  21015494 gcc 21015496  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 11024997 - 11024934
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||||||||||| || |||||||| ||||||||||||| ||||||  |||||||||||    
T  11024997 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctct 11024934  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 632
Target Start/End: Complemental strand, 47452363 - 47452040
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttactgcca 405  Q
    ||||||||||||||| | || ||||||||| ||| ||||| ||||||||||||||||||| |  ||   || |||||  |||||||| ||||||| |||     
T  47452363 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattttgaacttaccgcc- 47452265  T
Q  406 aaacacacgctcctagaattctattgataactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcatt 505  Q
       ||||| ||| ||||||| | || |||||  |||  || ||   || ||| || ||||| ||| | |||||  | ||||||||||||||   ||||      
T  47452264 --gcacacactcgtagaattgtgtttataacatcaacccttgacgttcgatcaatagatttagaagcgtcacttaatgatgatagtgcttctacttcacc 47452167  T
Q  506 gaatattaattttttgcttccacagtct-tttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtct 604  Q
    |||  |||||||||||||||| || |||   || | | ||||| ||||||||||| |||||||||||||||||||| ||||||  ||||    |||   |    
T  47452166 gaaccttaattttttgcttccccaatctgagtata-atcttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacat 47452068  T
Q  605 atggaatccatccactggagttcacaaa 632  Q
    ||||||||||||||||||||||||||||    
T  47452067 atggaatccatccactggagttcacaaa 47452040  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 11006418 - 11006359
Alignment:
Q  306 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||  |||||||||||    
T  11006418 ccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 11006359  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 11015985 - 11015922
Alignment:
Q  302 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 365  Q
    |||||||||||||||||| || |||||||| ||||||||||||| || |||  |||||||||||    
T  11015985 gttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctct 11015922  T

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