View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4501_high_39 (Length: 228)
Name: NF4501_high_39
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_39 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 8927852 - 8927625
Alignment:
| Q |
1 |
tcatcatagcttcaaatctaggctctttagcttggaatttgagtcccatatagagtttcatgtaatcatcaaagataaattttggataaatttcacttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8927852 |
tcatcatagcttcaaatctaggctctttagcttggaatttgagtcccatatagagtttcatgtaatcatcaaagataaattttggataaatttcacttgt |
8927753 |
T |
|
| Q |
101 |
ttcatcttcctttaataaggttgaagctggtgagattacagcatcattccctggattgtagaatgaagctatggacattctagcaccatctgtttgagca |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8927752 |
ttcatcttccttcaataaggttgaagctggtgagattacagcatcattccctggattgtagaatgaagctatggacattctagcaccatctgtttgagca |
8927653 |
T |
|
| Q |
201 |
attactctgtgcatcacactcttgtact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8927652 |
attactctgtgcatcacactcttgtact |
8927625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 55528581 - 55528402
Alignment:
| Q |
50 |
atagagtttcatgtaatcatcaaagataaattttggataaatttcacttgtttcatct---tcctttaataaggttgaagctggtgagattacagcatca |
146 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||| |||| || |||| ||||| ||||| | |||| || ||||| ||||| || || ||| |
|
|
| T |
55528581 |
atagagtttcatgtaatcatcaaaaacaaactttgggtaaacttggtttgtcacatctaattccttcaccaaggctggtgctggagagatcactgcgtca |
55528482 |
T |
|
| Q |
147 |
ttccctggattgtagaatgaagctatggacattctagcaccatctgtttgagcaattactctgtgcatcacactcttgta |
226 |
Q |
| |
|
|| |||||||| || |||||||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
55528481 |
ttgcctggattataaaatgaagctatggacattcttttcccatctgtttgagcaattacacggtgcaacacactcttgta |
55528402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University