View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_44 (Length: 222)
Name: NF4501_high_44
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 40776403 - 40776213
Alignment:
| Q |
18 |
taaccttagtggatgaggtaacaaattatcactaatgcagggatctgtttcagttagcatgtccgtttttcagtcacgcatgtgctttgtttgttctcat |
117 |
Q |
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| T |
40776403 |
taaccttagtggatgaggtaacaaattatcactaatgcagggatctgtttcagttagcatgtccgtttttcagtcacgcatgtgctttgtttgttctcat |
40776304 |
T |
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| Q |
118 |
ctggcttccggtcaaaaagatggagcagaacaaagaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagcctttg |
208 |
Q |
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| T |
40776303 |
ctggcttccggtcaaaaagatggagcggaacaaagaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagtctttg |
40776213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 40769504 - 40769330
Alignment:
| Q |
34 |
ggtaacaaattatcactaatgcagggatctgtttcagttagcatgtccgtttttcagtcacgcatgtgctttgtttgttctcatctggcttccggtcaaa |
133 |
Q |
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| T |
40769504 |
ggtaacaaaatatcactgatgcaggggtctgtttcagttagcatgtctgtttttcagtcacgtatgtgctttgtttgttcccatctggcttcaggtcaga |
40769405 |
T |
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| Q |
134 |
aagatggagcagaacaaagaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagcctttg |
208 |
Q |
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| T |
40769404 |
aagatggagcggaacaaagacgaaactcagatgtacatgaaattctacaacgcactcgtttctcatcagtctttg |
40769330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 212
Target Start/End: Original strand, 4678766 - 4678926
Alignment:
| Q |
52 |
atgcagggatctgtttcagttagcatgtccgtttttcagtcacgcatgtgctttgtttgttctcatctggcttccggtcaaaaagatggagcagaacaaa |
151 |
Q |
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| T |
4678766 |
atgcagggttctgtttcaatcagcatgtcactctttcagtcgcgtatgtgctttgtttgttcgcatctgacctctggtacgaaggatggagctgaacaaa |
4678865 |
T |
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| Q |
152 |
gaaggaactcagatgttcacgaaattctccaacgcactcgcttttcatcagcctttgctac |
212 |
Q |
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| T |
4678866 |
gacgaaactcagatgttaatgaaattctccgacgcacttgcttctcgtctgtctttgctac |
4678926 |
T |
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