View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4501_high_5 (Length: 648)
Name: NF4501_high_5
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Original strand, 25828076 - 25828698
Alignment:
| Q |
18 |
cttccaaactaccatcactgacaatctattgaatgtcgttccaaaggccagccagaatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagc |
117 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25828076 |
cttccaaactactatcactgacaatctattgaatgtcgttccaaaggacagccataatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagc |
25828175 |
T |
|
| Q |
118 |
caaatcctaatcataagaaacacaaccaacacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacagatt |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25828176 |
catatcctaatcataagaaacacaaccaacacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacacatt |
25828275 |
T |
|
| Q |
218 |
cttcagactaagtgtttgattttcgggagaacctttaaccgccacatccgactcagaaacctggtcttcaaagatgcgatgtatccaccaaaccttccat |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25828276 |
cttcagactaagtgtttgattttcaggagaacctctaaccgccatatccggctcagaaacctggtcttcaaagatgcgatgtatccaccaaaccttccat |
25828375 |
T |
|
| Q |
318 |
acaaagcctatatacactttttacataatactcgtcatccttttcagctttccaaatcaatttatcatctgccacctaatcaaatatatcgcaaaatact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25828376 |
acaaagcctatatacactttttacataatactcgccatccttttcagctttccaaatcaatttatcatctgacacctaatcaaatatatcgcaaaatact |
25828475 |
T |
|
| Q |
418 |
agaagcaatattcgggctaaaaacatgatgaatcaaatcatggttctatacctttcgcgtaggaaccatcagactagcaacagaaaaattacgaacatgg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25828476 |
agaagcaatattcgggctaaaaacatgatgaatcaaatcatggttccatacctttcgcgtaggaaccatcagactagcaacagaaaaattacaaacatgg |
25828575 |
T |
|
| Q |
518 |
taaatgtttggcatattaccatcaatacggtcaccattacaagcc--aaggttcatcaagaatggaaataaaagtacttggccctatgcaccatcaaaca |
615 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25828576 |
tatatgtttggcatattaccatcaatacggtcaccattacaagccaaaaggttcatcaagaatggaaataaaagtacttggtcctatgcaccatcaaaca |
25828675 |
T |
|
| Q |
616 |
cccccttgaactattcccctttg |
638 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
25828676 |
cccccttgaactattcccctttg |
25828698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 25669604 - 25669885
Alignment:
| Q |
18 |
cttccaaactaccatcactgacaatctattgaatgtcgttccaaaggccagccagaatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagc |
117 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
25669604 |
cttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagc |
25669703 |
T |
|
| Q |
118 |
caaatcctaatcataagaaacacaaccaacacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacagatt |
217 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |
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| T |
25669704 |
caaatcctaatcagaagaaacacaactaacacactttatagggccttggacacctttatcctgtaaacgaactcgtgtaggcaaacgatctcgacacatt |
25669803 |
T |
|
| Q |
218 |
cttcagactaagtgtttgattttcgggagaacctttaaccgccacatccgactcagaaacctggtcttcaaagatgcgatgt |
299 |
Q |
| |
|
| | |||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||| |||||| |||| ||||| |
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|
| T |
25669804 |
ccccgaactaagtgtttgattttcgggagaacttttaaccgccaaatccggctcataaacctgaccttcaatgatgtgatgt |
25669885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 25472322 - 25472515
Alignment:
| Q |
36 |
tgacaatctattgaatgtcgttccaaaggccagccagaatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccaaatcctaatcataaga |
135 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||| ||| ||||||||||||||||| | |||| |
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|
| T |
25472322 |
tgacaatctattgaatgttgttccaaaggccagccagaa-ccaaacttgcaatgtaaatgggcaagtaaaagacaagtgagccaaatcctaattagaaga |
25472420 |
T |
|
| Q |
136 |
aacacaaccaacacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacagattcttcagactaagtgttt |
234 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
25472421 |
aacacaactaacacact----agggcattagacacctttatcctgtaaacgaactcgtgtaggcaaacaaccaagacacattcttcagactaagtgttt |
25472515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 24889287 - 24889105
Alignment:
| Q |
36 |
tgacaatctattgaatgtcgttccaaaggccagccagaatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccaaatcctaatcataaga |
135 |
Q |
| |
|
||||| ||| ||||||||||||||||| | ||||| ||||||||||| |||| |||||| |||||||| ||| |||||||||||| |||||| |||| |
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|
| T |
24889287 |
tgacagtctgttgaatgtcgttccaaatgtcagcctcaatccaaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaaga |
24889188 |
T |
|
| Q |
136 |
aacacaaccaacacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacagattc |
218 |
Q |
| |
|
|||||||| |||||||| | |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |
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|
| T |
24889187 |
aacacaactaacacactttgtagggtattggacacctttatcctctaaacgaacttttgtaggcaaacaacctcgacacattc |
24889105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 25429625 - 25429798
Alignment:
| Q |
36 |
tgacaatctattgaatgtcgttccaaaggccagccagaatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccaaatcctaatcataaga |
135 |
Q |
| |
|
||||| ||| ||||||||||||||||| | ||||| ||||||||||| |||| |||||| |||||||| ||| |||||||||||| |||||| |||| |
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|
| T |
25429625 |
tgacagtctgttgaatgtcgttccaaatgtcagcctcaatccaaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaaga |
25429724 |
T |
|
| Q |
136 |
aacacaaccaacacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctc |
209 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
25429725 |
aacacaactaacacactttgtagggcattggacacctttatcctctaaacgaacttttgtaggcaaacaacctc |
25429798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 236 - 421
Target Start/End: Complemental strand, 24888411 - 24888224
Alignment:
| Q |
236 |
attttcgggagaacctttaaccgccacatccgactcagaaacctggtcttcaaagatgcgatgtatccaccaaaccttccatacaaagcctatatacac- |
334 |
Q |
| |
|
|||||||||| ||||||||||||| | |||| | ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
24888411 |
attttcgggaaaacctttaaccgctaaatccagcccagaaacctggtctttgaaaatgcgatgtatccaccgaaccttccatacaaagcctatagacact |
24888312 |
T |
|
| Q |
335 |
-----tttttacata--atactcgtcatccttttcagctttccaaatcaatttatcatctgccacctaatcaaatatatcgcaaaatactagaa |
421 |
Q |
| |
|
|||||||||| |||||| || |||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
24888311 |
ttttatttttacatatcatactcatcgtccttttctgctttccaaatcaatttgtcatctg------aatcaaacatatcgcaaaatactagaa |
24888224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 25430519 - 25430612
Alignment:
| Q |
247 |
aacctttaaccgccacatccgactcagaaacctggtcttcaaagatgcgatgtatccaccaaaccttccatacaaagcctatatacacttttta |
340 |
Q |
| |
|
||||||||||||||| |||| | |||||||| || ||| | |||||||||||||||| |||||||||||||||||| |||||||||||||| |
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|
| T |
25430519 |
aacctttaaccgccaaatccagcctagaaacctagttttcggaaatgcgatgtatccaccgaaccttccatacaaagcccatatacacttttta |
25430612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 363
Target Start/End: Complemental strand, 25983869 - 25983546
Alignment:
| Q |
47 |
tgaatgtcgttccaaaggccagccagaatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccaaatcctaatcataagaaacacaaccaa |
146 |
Q |
| |
|
||||||| ||||||||||||| || | |||||||| ||| | ||||||||||||| ||| ||| |||| |||||||| || | || || |||| || |
|
|
| T |
25983869 |
tgaatgttgttccaaaggccaaccgtagcccaaacttgcatcgcaaatgggcaagtacaaatcatatgagtcaaatcctcataagaaaaatcacatttaa |
25983770 |
T |
|
| Q |
147 |
cacactctaaagggcattggacacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacagattcttcagactaagtgtttgattttcgggag |
246 |
Q |
| |
|
||| || ||| | ||||||||||||||||| | ||||||||| | |||| ||||||| | ||||| |||| ||| ||||||| ||||| ||||||||| |
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|
| T |
25983769 |
cactctataatg--cattggacacctttatcttttaaacgaacccacgtagacaaacaatcccgacacattcgtcatactaagtttttgactttcgggag |
25983672 |
T |
|
| Q |
247 |
aacctttaaccgccacatcc--gactcagaaacctggtcttcaaagatgcgatgtatccaccaaa--------ccttccatacaaagcctatatacactt |
336 |
Q |
| |
|
|||| || || ||| || | ||| ||||| ||||||| ||||||| |||||||||||||| ||||||||||||||| | || |||||| |
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|
| T |
25983671 |
aaccattcgcctccaaataccagac-cagaatcctggtcacagaagatgcaatgtatccaccaaatgaccaaaccttccatacaaagcttgtacacactt |
25983573 |
T |
|
| Q |
337 |
tttacataatactcgtcatccttttca |
363 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
25983572 |
tttacataatactcaccatccttttca |
25983546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 14230099 - 14230006
Alignment:
| Q |
295 |
gatgtatccaccaaaccttccatacaaagcctatatacactttttacataatactcgtcatccttttcagctttccaaatcaatttatcatctg |
388 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| |||| ||||||||| | ||||||| |||||||||||||||| || |||||||| ||||||| |
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|
| T |
14230099 |
gatgtatccatcaaaccttacatgcaaagcttatacgcactttttagagaatactcaccatccttttcagcttttcagatcaatttgtcatctg |
14230006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 41837477 - 41837347
Alignment:
| Q |
83 |
tacattgtaaatgggcaagtaaaaaacatgtgagccaaatcctaatcataagaaacacaaccaacacactctaaagggcattggacacctttatcctgta |
182 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| ||| |||| ||| ||||| |||||| |||||| | | ||||||||| | || |||| | |||| |
|
|
| T |
41837477 |
tacattgcaaatgggcaagtaaaaaacatgcgagtcaagtcctcatcgaaagaatcacaactaacacaatttgtagggcattgaaaacatttaccttgta |
41837378 |
T |
|
| Q |
183 |
aacgaactcgtgtaggcaaacaacctcgaca |
213 |
Q |
| |
|
| || ||| | || ||||||||||||||||| |
|
|
| T |
41837377 |
agcgtacttgcgtgggcaaacaacctcgaca |
41837347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 38911773 - 38911834
Alignment:
| Q |
167 |
acacctttatcctgtaaacgaactcgtgtaggcaaacaacctcgacagattcttcagactaa |
228 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| ||||||||| ||| |||| | ||||||| |
|
|
| T |
38911773 |
acacctttatcctgtaaacgaatttgcgtaggccaacaacctcaacacattcgttagactaa |
38911834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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