View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_high_7 (Length: 644)
Name: NF4501_high_7
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 6232409 - 6233036
Alignment:
| Q |
1 |
aataggaggcaatgtcgtacgagtagaagaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6232409 |
aataggaggcaatgtcgtacgagtagaagaaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcat |
6232508 |
T |
|
| Q |
101 |
ttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6232509 |
ttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctaa |
6232608 |
T |
|
| Q |
201 |
aaaatcttttccttcttgtgataattcgtctggaatctttggcaattcttctccaaccccaattcgaatcgtcaacattaacatatctgactcattccat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
6232609 |
aaaatcttttccttcttgtgataattcctctggaatttttggcaattcttctccaacaccaattcgaatcgtcaacatcaacatatctgattcattccat |
6232708 |
T |
|
| Q |
301 |
---gcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgaca |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
6232709 |
gcggcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgaca |
6232808 |
T |
|
| Q |
398 |
taatcatcggagttcctctcggttgccacttttcaccttgttctacacctatctctttcgcaaggccgaaatctgaaatcttaatgtttccgttctcgaa |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6232809 |
taatcatcggagttcctctcggttgccacttttcaccttgttctacacctgtctctttcgcaagcccgaaatctgaaatcttaatgtttccgttctcgaa |
6232908 |
T |
|
| Q |
498 |
tacgagaatgttgggcaacttcaaatcacaatgaacaaacccttttttgtgaatatacttgagtccttcaactaccgacctcgtataattaacggcggac |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6232909 |
tacgagaatgttgggcaacttcaaatcacaatgaacaaacccttttttgtgaatatacttgagtccttcaactaccgacctcgta----taacggcggac |
6233004 |
T |
|
| Q |
598 |
gaggttatccgggagcttaccaccatgtttct |
629 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
6233005 |
gaggttatccgggagcttaccaccatgtttct |
6233036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 73 - 481
Target Start/End: Original strand, 6221699 - 6222116
Alignment:
| Q |
73 |
gacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctca |
172 |
Q |
| |
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|||||||||||||||| | ||||| || || | ||||||||||||| || | ||||||||| |||||| || ||||| ||||| ||||||||| | |
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| T |
6221699 |
gacaatggcaactcattgatcaactctttcaccaatgaaacagtttcatcacctgagataaactcatgtttcaaaagcatctctgccgtccatctttttg |
6221798 |
T |
|
| Q |
173 |
aaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatctttggcaattcttctccaaccccaattcgaatcgt |
272 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |||| ||| | ||||||||||||| |
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| T |
6221799 |
aaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatcaacggtgattcgtcttctgccccaattcgaattaa |
6221898 |
T |
|
| Q |
273 |
caacattaacatatctga----ct-----cattccatgcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctggcgat |
363 |
Q |
| |
|
|||| |||||| ||| || |||||||||| ||| || ||| ||||||||| | ||||||||||||||||||||||| || || ||| |
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| T |
6221899 |
caacgaccacatatttgaaccgctgcttacattccatgcatgtttacccgtagccatctccacaatagcgcaaccaagagcccatatatctgccggtgat |
6221998 |
T |
|
| Q |
364 |
tcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttcaccttgttctacacctatctctttcgcaaggc |
463 |
Q |
| |
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||||||||||| || ||||| ||||||||||||||| || |||||||| || || | | ||| |||| |||| || |||| |||| || ||||||| |
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| T |
6221999 |
tcataaacactctcgttcaccgcttctggtgacatatacaatggagttcccctacattccaattttccaccatgttttagacctttctccttagcaaggc |
6222098 |
T |
|
| Q |
464 |
cgaaatctgaaatcttaa |
481 |
Q |
| |
|
| ||||| |||||||||| |
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|
| T |
6222099 |
caaaatccgaaatcttaa |
6222116 |
T |
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