View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_10 (Length: 510)
Name: NF4501_low_10
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 20801670 - 20801324
Alignment:
| Q |
1 |
aatggctgtgattttctaaaactggattgtggaatctgaggttgaaatttggaatggaaattttatgannnnnnnnn-cataatttttagtttagtatat |
99 |
Q |
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| T |
20801670 |
aatggctgtgattttctaaaactggattgtggaatctgaggttgaaatttggaatggaaattttatgattttttttttcataatttttagtttagtatat |
20801571 |
T |
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| Q |
100 |
gaattaaacnnnnnnngtaataataatttgttaatgtggattattattccttatgttaatcatttatttttggaatgcaggatgaggtatagttggcagt |
199 |
Q |
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| T |
20801570 |
gaattaaacaaaaaaagtaataataatttgttaatgtggattattattccttatgttaatcatttatttttggaatgcaggatgaggtatagttggcagt |
20801471 |
T |
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| Q |
200 |
agtgttgaatctttaaaaggaaaactcaaaagcttgtgattattttccttacaaggatgatttgcagcgggaaagagagtaatgcaattaacaaaagtgg |
299 |
Q |
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| T |
20801470 |
agtgttgaatctttaaaaggaaaactcgaaagcttgtgattattttccttacaaggatgatttgcggcgggaaagagagtaatgcaattaacaaaagtgg |
20801371 |
T |
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| Q |
300 |
tggaggttgaattgaatctaatattaagatctgtttttgattcagtc |
346 |
Q |
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| T |
20801370 |
tggaggttgaattgaatctaatattaagatctgtttttgattcagtc |
20801324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 412 - 503
Target Start/End: Complemental strand, 20801258 - 20801167
Alignment:
| Q |
412 |
aatccatatatgggttgaagagatctgtgtgtttggtagtgaagtgaaatattgaaatggcgattgctggtttgcatagtgtgtctgtgctc |
503 |
Q |
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| T |
20801258 |
aatccatatatgggttgaagagatctgtgtgtttggtagtgaagtgaaatattgaaatggcgattgctggtttgcatagtgtgtctgtgctc |
20801167 |
T |
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