View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_16 (Length: 461)
Name: NF4501_low_16
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 10982766 - 10983075
Alignment:
| Q |
1 |
agagaagaaggtggaagttcccttgtcgctttgaataagttggctaagttgtggaagcagaattagaagtaacataatataacttttttatatgatatgg |
100 |
Q |
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| T |
10982766 |
agagaagaaggtggaagttcccttgtcgctttgaataagttggctcagttgtggaagcagaattagaagtaacataatataactttt-tatatgatatgg |
10982864 |
T |
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| Q |
101 |
gttttgttggcccttatcataagttgttttgttgtctcataaaataaaatttatgaataaaatggtgttgaaattgtgattcggataaattgggctcctt |
200 |
Q |
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| T |
10982865 |
gttttgttggcccttatcataagttgttttgttgtctcataaaataaaatttatgaataaaatggtggtgaaattgtgattcggataaattgggctcctt |
10982964 |
T |
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| Q |
201 |
taatttatttgtttttgtaataaataggtggtttaattcataaatatttgcacaattatccttttctacacaaattattttaaaagtgctcagcgatact |
300 |
Q |
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| T |
10982965 |
taatttatttgtttttgtaataaataggtggtttaattcataaatatttgcacaattatccttttccatacaaattattttaaaagtgctcagcgatact |
10983064 |
T |
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| Q |
301 |
atttctttatg |
311 |
Q |
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| T |
10983065 |
atttctttatg |
10983075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10968816 - 10968877
Alignment:
| Q |
1 |
agagaagaaggtggaagttcccttgtcgctttgaataagttggctaagttgtggaagcagaa |
62 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||| |
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| T |
10968816 |
agagaagaaggtggaagttcacttgttgctttgaataatctggcacagttgtggaagcagaa |
10968877 |
T |
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