View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_low_21 (Length: 392)

Name: NF4501_low_21
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_low_21
NF4501_low_21
[»] chr3 (8 HSPs)
chr3 (1-378)||(38186850-38187229)
chr3 (49-189)||(38181065-38181210)
chr3 (299-342)||(41709199-41709242)
chr3 (297-343)||(38181389-38181435)
chr3 (56-131)||(3987011-3987086)
chr3 (297-342)||(16688813-16688858)
chr3 (297-342)||(28860617-28860661)
chr3 (69-125)||(344967-345023)
[»] chr6 (2 HSPs)
chr6 (56-157)||(33083996-33084097)
chr6 (297-342)||(5656573-5656618)
[»] chr7 (5 HSPs)
chr7 (56-164)||(48736142-48736250)
chr7 (56-106)||(36514450-36514500)
chr7 (58-164)||(30200208-30200310)
chr7 (67-104)||(40169640-40169677)
chr7 (297-342)||(41008917-41008962)
[»] chr5 (5 HSPs)
chr5 (56-125)||(42199258-42199325)
chr5 (56-135)||(3097135-3097212)
chr5 (297-342)||(8285233-8285278)
chr5 (111-164)||(16134477-16134530)
chr5 (56-104)||(10082982-10083030)
[»] chr4 (7 HSPs)
chr4 (52-126)||(10775661-10775735)
chr4 (297-343)||(33614378-33614424)
chr4 (56-131)||(6478911-6478986)
chr4 (297-342)||(13119230-13119275)
chr4 (297-342)||(49448251-49448296)
chr4 (57-105)||(44360077-44360125)
chr4 (293-341)||(54090930-54090978)
[»] chr1 (7 HSPs)
chr1 (299-343)||(34835629-34835673)
chr1 (56-165)||(39422285-39422393)
chr1 (56-120)||(18793231-18793295)
chr1 (58-125)||(43423689-43423756)
chr1 (62-164)||(9509249-9509351)
chr1 (297-342)||(7790406-7790451)
chr1 (108-164)||(42009611-42009667)
[»] chr2 (4 HSPs)
chr2 (73-164)||(9556628-9556719)
chr2 (56-125)||(38434921-38434990)
chr2 (292-340)||(6511051-6511099)
chr2 (58-106)||(7615286-7615334)
[»] chr8 (7 HSPs)
chr8 (56-131)||(32043554-32043629)
chr8 (56-106)||(25985508-25985558)
chr8 (56-106)||(45419226-45419276)
chr8 (297-342)||(10028782-10028827)
chr8 (56-164)||(16252866-16252972)
chr8 (67-131)||(9695595-9695659)
chr8 (57-165)||(39953508-39953616)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 38186850 - 38187229
Alignment:
Q  1 tttggtgttctgactctcctccatatgatctacactcttaatcacatacatctatgtctagtttttaccatcttttctaccataagtgttaccccaattc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38186850 tttggtgttctgactttcctccatatgatctacactcttaaccacatacatctatgtctagtttttaccatcttttctaccataagtgttaccccaattc 38186949  T
Q  101 tctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacattttaattgaattttaagatagattgcgctctcctct 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38186950 tctctatgacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacattttaattgaattttaagatagattgcgctctcctct 38187049  T
Q  201 tt-nnnnnnnncttcgttcctcaaataaatttctgagtaaaccattaaattgatctatatctttaat-aaaccactttcaaatttgtcacatgttctgtt 298  Q
    ||         ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  38187050 ttaaaaaaaaacttcgttcctcaaataaatttatgagtaaaccattaaattgatctatatttttaataaaaccactttcaaatttgtcacatgttctgtt 38187149  T
Q  299 aatatttcaaactagtctctatctttgtcaaaggtttctcaattttttctaggcaagacgaggcaccgacactcatgatg 378  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  38187150 aatatttcaaactagtctctatctttgtcaaaaatttctcaattttttctagacaagacgaggcaccgacactcatgatg 38187229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 38181065 - 38181210
Alignment:
Q  49 catctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcat 148  Q
    |||||| ||||| ||| |||||| |||||||||||||||| ||||| |||| | ||| ||||||||||||||||||||||||||||||||| | ||||||    
T  38181065 catctaagtctaatttctaccat-ttttctaccataagtgataccc-aattttatctttaacgtcgtcatttgtaattatatctcatttaaccttatcat 38181162  T
Q  149 acatccaac-------acaacattttaattgaattttaagatagattg 189  Q
    | |||||||        ||||||||||||||||| |||||||||||||    
T  38181163 atatccaacggccaatgcaacattttaattgaatcttaagatagattg 38181210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 41709199 - 41709242
Alignment:
Q  299 aatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  41709199 aatatttcaaactaatctctatctttgtcaaaagtttctcaatt 41709242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 38181389 - 38181435
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaattt 343  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  38181389 ttaatatttcaaactagtctccatctttatcaaaagtttctcaattt 38181435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 3987086 - 3987011
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 131  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| |||||||  ||  ||||||||| ||||| ||||    
T  3987086 gtctagtttctaccatcttttctactataggtgataccccaactctctctccaatatcgtcatttctaattctatc 3987011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 16688858 - 16688813
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    ||||||||||||| || ||||||||||||||||| | |||||||||    
T  16688858 ttaatatttcaaaataatctctatctttgtcaaatgattctcaatt 16688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 28860661 - 28860617
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||    
T  28860661 ttaatatttcaaactagtctct-tttttgtcaaaagtttctcaatt 28860617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 344967 - 345023
Alignment:
Q  69 catcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 125  Q
    |||||||||||| ||||||| |||||||| ||||||| ||| ||| |||||| ||||    
T  344967 catcttttctactataagtgctaccccaactctctctctaatgtcatcatttctaat 345023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 33084097 - 33083996
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 155  Q
    ||||||||| ||||||||||||||||||| ||| |||||||| ||||||| |||  ||||||||| ||||| |||| ||| || || || || |||||||    
T  33084097 gtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttctaattctatcccatctagtcttaccacacatcca 33083998  T
Q  156 ac 157  Q
    ||    
T  33083997 ac 33083996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 5656618 - 5656573
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    ||||||||| |||||||||||| ||||||| ||| |||||||||||    
T  5656618 ttaatattttaaactagtctctgtctttgttaaaagtttctcaatt 5656573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 48736142 - 48736250
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 155  Q
    ||||||||| | |||||||||||||  || ||| |||||||| ||||||||||| |||||||||| ||||| |||||||| || || || || |||| ||    
T  48736142 gtctagtttctcccatcttttctactgtaggtgctaccccaactctctctataatgtcgtcatttctaattttatctcatctagtcttaccacacattca 48736241  T
Q  156 acacaacat 164  Q
    || ||||||    
T  48736242 acgcaacat 48736250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 36514450 - 36514500
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 106  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||    
T  36514450 gtctagtttctaccatcttttctactataggtgctaccccaactctctcta 36514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 30200208 - 30200310
Alignment:
Q  58 ctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaac 157  Q
    |||||||  |||||||||||||| ||| ||||||||| || |||||    || || ||||||| |||| ||||| ||| ||||| || || |||||||||    
T  30200208 ctagtttccaccatcttttctactataggtgttaccctaactctct----aatgttgtcatttctaatcatatcccatctaatcttaccacacatccaac 30200303  T
Q  158 acaacat 164  Q
    |||||||    
T  30200304 acaacat 30200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 40169677 - 40169640
Alignment:
Q  67 accatcttttctaccataagtgttaccccaattctctc 104  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  40169677 accatcttttctactataagtgctaccccaattctctc 40169640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 41008962 - 41008917
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    ||||||||| ||| |||||||||||||||| ||| |||||||||||    
T  41008962 ttaatattttaaaatagtctctatctttgttaaaagtttctcaatt 41008917  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 42199325 - 42199258
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 125  Q
    |||||||||  ||||||||||||||  |||||| |||||||||||||||| |||||||||||||| ||||    
T  42199325 gtctagtttccaccatcttttctac--taagtgctaccccaattctctctgtaacgtcgtcatttctaat 42199258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 3097212 - 3097135
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcat 135  Q
    ||||||||| || |||||||||||  ||| ||||||||||||  |||||||||| |||||||||| ||||| ||||||||    
T  3097212 gtctagtttctagcatcttttctaatataggtgttaccccaa--ctctctataatgtcgtcatttttaattttatctcat 3097135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 8285278 - 8285233
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    ||||||||| ||| |||||| ||||||||||||| |||||||||||    
T  8285278 ttaatattttaaaatagtctatatctttgtcaaaagtttctcaatt 8285233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 16134477 - 16134530
Alignment:
Q  111 gtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 164  Q
    |||||||||| ||||| |||||||| || || || |||||||||||||||||||    
T  16134477 gtcgtcatttctaattttatctcatctagtcttaccatacatccaacacaacat 16134530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 10082982 - 10083030
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctc 104  Q
    ||||||||| ||||||||||||||| ||| ||| ||||||||| |||||    
T  10082982 gtctagtttctaccatcttttctactataggtgataccccaatgctctc 10083030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 10775661 - 10775735
Alignment:
Q  52 ctatgtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaatt 126  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||  |||||| ||| || ||||||| |||||    
T  10775661 ctatgtctagtttctaccatcttttctactataggtgttaccccaacactctctctaatgttgtcatttctaatt 10775735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 33614424 - 33614378
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaattt 343  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||    
T  33614424 ttaatatttcaaactagtctctgtctttgacaaaagtttctcaattt 33614378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 6478911 - 6478986
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 131  Q
    ||||||||||||||||||||||||| ||| |||  ||||||| |||| || ||| ||| |||||| ||||| ||||    
T  6478911 gtctagtttttaccatcttttctactataggtgccaccccaactctcactctaatgtcatcatttctaattctatc 6478986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 13119230 - 13119275
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    ||||||||||||| ||||| || ||||||||||| |||||||||||    
T  13119230 ttaatatttcaaaatagtcgctgtctttgtcaaaagtttctcaatt 13119275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 49448296 - 49448251
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    |||||||||||||||||||| | ||||||||||| |||| ||||||    
T  49448296 ttaatatttcaaactagtctttgtctttgtcaaaagtttatcaatt 49448251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 44360125 - 44360077
Alignment:
Q  57 tctagtttttaccatcttttctaccataagtgttaccccaattctctct 105  Q
    |||||||| ||||||||||||||| ||| ||| |||||||| |||||||    
T  44360125 tctagtttctaccatcttttctactataggtgataccccaactctctct 44360077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 54090930 - 54090978
Alignment:
Q  293 tctgttaatatttcaaactagtctctatctttgtcaaaggtttctcaat 341  Q
    |||||||||||||||||||||||| | |||||||| ||  |||||||||    
T  54090930 tctgttaatatttcaaactagtctatgtctttgtcgaaactttctcaat 54090978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 34835629 - 34835673
Alignment:
Q  299 aatatttcaaactagtctctatctttgtcaaaggtttctcaattt 343  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  34835629 aatatttcaaactagtctctgtctttgtcaaaagtttctcaattt 34835673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 39422285 - 39422393
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 155  Q
    ||||||||| ||| ||||||||||| ||| ||||||| |||| ||||| | |||  | ||||||| ||||| |||||||| ||||| || || ||||| |    
T  39422285 gtctagtttctactatcttttctactatatgtgttactccaactctct-tctaatattgtcatttctaattctatctcatataatcctaccacacatcta 39422383  T
Q  156 acacaacatt 165  Q
    ||||||||||    
T  39422384 acacaacatt 39422393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 18793231 - 18793295
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcattt 120  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||  |||||| ||| ||||||||||    
T  18793231 gtctagtttctaccatcttttctacaataagtcctaccccaaccctctctttaatgtcgtcattt 18793295  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 43423756 - 43423689
Alignment:
Q  58 ctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 125  Q
    |||||||  |||||||||||||| ||| |||||||||||| ||||||| ||| || ||||||| ||||    
T  43423756 ctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgtggtcatttctaat 43423689  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 9509351 - 9509249
Alignment:
Q  62 tttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaa 161  Q
    ||||||||||||||||||| ||| ||| |||||||| ||||||| ||| |  ||||||| |||| |||||   | || || |||||  ||||||||||||    
T  9509351 tttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaatcatatcctgtctagtcttatcactcatccaacacaa 9509252  T
Q  162 cat 164  Q
    |||    
T  9509251 cat 9509249  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 7790451 - 7790406
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    ||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  7790451 ttaatatttcaaattagtttctatctttatcaaaagtttctcaatt 7790406  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 42009667 - 42009611
Alignment:
Q  108 aacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 164  Q
    ||||| ||||| ||||||| |||||| ||||||| || || ||||||||||||||||    
T  42009667 aacgttgtcatctgtaattttatctcgtttaatcttaccaaacatccaacacaacat 42009611  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 9556628 - 9556719
Alignment:
Q  73 ttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaacacaacat 164  Q
    |||||||| |||||||||||||||| | ||||| ||| || ||||||| |||| ||||| | | ||||| || || ||||||||||||||||    
T  9556628 ttttctactataagtgttaccccaactttctctctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaacat 9556719  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 38434990 - 38434921
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaat 125  Q
    |||||||||  |||||||||||||| ||| ||| |||||||||||||||| ||| || ||||||| ||||    
T  38434990 gtctagtttccaccatcttttctactataggtgctaccccaattctctctctaatgttgtcatttctaat 38434921  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 6511051 - 6511099
Alignment:
Q  292 ttctgttaatatttcaaactagtctctatctttgtcaaaggtttctcaa 340  Q
    |||||||||||||||||| ||||||| ||||||||||||  ||||||||    
T  6511051 ttctgttaatatttcaaaatagtctccatctttgtcaaaaatttctcaa 6511099  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 7615334 - 7615286
Alignment:
Q  58 ctagtttttaccatcttttctaccataagtgttaccccaattctctcta 106  Q
    |||||||  |||||||||||||| ||| |||||||||||| ||||||||    
T  7615334 ctagtttgcaccatcttttctactataggtgttaccccaagtctctcta 7615286  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 32043629 - 32043554
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 131  Q
    ||||||||| ||||||||||| ||| ||| ||| |||||||| ||||||| ||| || ||||||| ||||| ||||    
T  32043629 gtctagtttctaccatcttttgtactataggtgataccccaactctctctctaatgttgtcatttctaattctatc 32043554  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 25985558 - 25985508
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 106  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||    
T  25985558 gtctagtttctaccatcttttctactataggtgctaccccaactctctcta 25985508  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 45419276 - 45419226
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctcta 106  Q
    ||||| ||| ||||||||||||||| ||| ||| |||||||||||||||||    
T  45419276 gtctattttataccatcttttctactataggtgctaccccaattctctcta 45419226  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 10028782 - 10028827
Alignment:
Q  297 ttaatatttcaaactagtctctatctttgtcaaaggtttctcaatt 342  Q
    |||||||||||||  |||||||||||||| |||| |||||||||||    
T  10028782 ttaatatttcaaatcagtctctatctttgccaaaagtttctcaatt 10028827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 16252972 - 16252866
Alignment:
Q  56 gtctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatcca 155  Q
    ||||||||| || |||||||||| ||||| | |  ||| ||| ||||||||  | || ||||||| ||||| |||||||| ||||| || || |||||||    
T  16252972 gtctagtttctatcatcttttcttccataggagcaacctcaactctctcta--atgttgtcatttctaattttatctcatctaatcttaccacacatcca 16252875  T
Q  156 acacaacat 164  Q
    |||||||||    
T  16252874 acacaacat 16252866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 9695659 - 9695595
Alignment:
Q  67 accatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatc 131  Q
    |||||||||||||| ||| ||| |||||||| | ||||||||| || ||||||| ||||| ||||    
T  9695659 accatcttttctactataggtgctaccccaaatatctctataatgttgtcatttctaattctatc 9695595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 39953508 - 39953616
Alignment:
Q  57 tctagtttttaccatcttttctaccataagtgttaccccaattctctctataacgtcgtcatttgtaattatatctcatttaatcatatcatacatccaa 156  Q
    |||||||| |||||||||||||   ||| ||| || ||||| ||||||| ||| ||| | |||| ||||||||||   ||||||| || || ||||||||    
T  39953508 tctagtttctaccatcttttctcatataggtgctatcccaactctctctctaatgtcattatttctaattatatcatgtttaatcttaccacacatccaa 39953607  T
Q  157 cacaacatt 165  Q
    | |||||||    
T  39953608 cgcaacatt 39953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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