View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_23 (Length: 368)
Name: NF4501_low_23
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_23 |
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| [»] scaffold0286 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 139 - 368
Target Start/End: Complemental strand, 13044 - 12815
Alignment:
| Q |
139 |
gatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
238 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13044 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
12945 |
T |
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| Q |
239 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
338 |
Q |
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| T |
12944 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
12845 |
T |
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| Q |
339 |
ttcgcctagtacagattcgagtttcatctc |
368 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12844 |
ttcgcctagtacagattcgagtttcatctc |
12815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 13167 - 13132
Alignment:
| Q |
17 |
acatacaagtctgtgccctacaggaactcaggggac |
52 |
Q |
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| T |
13167 |
acatacaagtctgtgccctacaggaactcgggggac |
13132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 139 - 368
Target Start/End: Original strand, 2170217 - 2170446
Alignment:
| Q |
139 |
gatgcgggtggaattgtgatagcgaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
238 |
Q |
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| T |
2170217 |
gatgcgggtggaattgtgatagagaactattgagtcttcatctaattttctcattcatacggattggtgaatcgaatatcctccatactacttttcagct |
2170316 |
T |
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| Q |
239 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
338 |
Q |
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| T |
2170317 |
tgaatacgtgaattccactttctataaccaatgcttcctctatgcaaccctcacacttaaacgtaatctctgcatggatccattcagctattaaaagtgc |
2170416 |
T |
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| Q |
339 |
ttcgcctagtacagattcgagtttcatctc |
368 |
Q |
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| T |
2170417 |
ttcgcctagtacagattcgagtttcatctc |
2170446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 185 - 333
Target Start/End: Complemental strand, 2188357 - 2188209
Alignment:
| Q |
185 |
tttctcattcatacggattggtgaatcgaatatcctccatactacttttcagcttgaatacgtgaattccactttctataaccaatgcttcctctatgca |
284 |
Q |
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||||||| | || ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| ||| |
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| T |
2188357 |
tttctcaattatgcggattggtaaatcgaatatcctccatactagttttcagcttgaatacgtgaactccactttctataaacaattcttcctctctgcc |
2188258 |
T |
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| Q |
285 |
accctcacacttaaacgtaatctctgcatggatccattcagctattaaa |
333 |
Q |
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| T |
2188257 |
gccctcacacttaaacgtaatctctgcatggatccattcatctattaaa |
2188209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 2170095 - 2170130
Alignment:
| Q |
17 |
acatacaagtctgtgccctacaggaactcaggggac |
52 |
Q |
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| T |
2170095 |
acatacaagtctgtgccctacaggaactcgggggac |
2170130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 16694636 - 16694585
Alignment:
| Q |
214 |
atatcctccatactacttttcagcttgaatacgtgaattccactttctataa |
265 |
Q |
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| T |
16694636 |
atatcctccatgctacttttctgcttgaataagtgaattccactttctataa |
16694585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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