View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_24 (Length: 356)
Name: NF4501_low_24
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 54014506 - 54014844
Alignment:
| Q |
1 |
atgaagagagtgatagtttttgaaaagataatctccatgaaatttcttatgtacccaataataaagtggctctgaaactcccacatgtagaatcatggca |
100 |
Q |
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| T |
54014506 |
atgaagagagtgatagtttttgaaaagataatctccatgaaatttcttatgtacccaataataaagtggctctgaaactcccacatgtagaatcatagca |
54014605 |
T |
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| Q |
101 |
acaataataccttttatattccatagaggaagatgctgaagaaatgggaaaatataggaaactaaggtagcaacgagtgtttgaagaatcaagaaattgt |
200 |
Q |
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| T |
54014606 |
acaataataccttttacattccatagaggaagatgctgaagaaatgggaaaatataggaaactaaggtagcaacaagtgtttgaagaatcaagaaattgt |
54014705 |
T |
|
| Q |
201 |
ccctgtttcaaaaaattatgatataaatcaataatcaacaaataattttcagcatatataatatactttgttaaatgataaaatgttgaattaccagtcc |
300 |
Q |
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| T |
54014706 |
ccctgtttcaaaaaattatgatataaatcaataatcaacaaataattttcagcatatataatatactttgttaaatgataaaatgttgaattaccagtcc |
54014805 |
T |
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| Q |
301 |
cattctttgtcaatctgcttgaaatcaacaccttgttga |
339 |
Q |
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| T |
54014806 |
cattctttgtcaatctgcttgaaatcaacaccttgttga |
54014844 |
T |
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