View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_27 (Length: 293)
Name: NF4501_low_27
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 14782396 - 14782110
Alignment:
| Q |
1 |
agtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggcgaatgtcgtgacgtggcagttttgttttatggggactgctgggatgg |
100 |
Q |
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| T |
14782396 |
agtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggctaatgtcgtgacgtggcagttttgttttatggggactgctgggatgg |
14782297 |
T |
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| Q |
101 |
tgtttttgacatcttcattaactggtgggatttgcatgacagcattgttgtctatgaatgtgttgggtggtgttatagtttatagagatgcatttggtgg |
200 |
Q |
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| T |
14782296 |
tgtttttgacatcttcattaactggtgggatttgcatgacagctttgttgtctatgaatgtgttgggtggtgttatagtttatagagatgcatttggtgg |
14782197 |
T |
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| Q |
201 |
tttgaaagctgtttcaactgttatgtgtatgtggggattttgttcttatgtttatggtatgtatgttaagatgttggaagagaaagg |
287 |
Q |
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| T |
14782196 |
tttgaaagctgtttcaactgttttgtgtatgtggggattttgttcttatgtttatggtatgtatgttaagatgttggaagagaaagg |
14782110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 14774509 - 14774232
Alignment:
| Q |
11 |
tttttgacaagggaagtagggtttattgggtgacggttatggcgaatgtcgtgacgtggcagttttgttttatggggactgctgggatggtgtttttgac |
110 |
Q |
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| T |
14774509 |
tttttgataagggaagtttggtttattgggtgacagttatggctaatgtggtgacgtggcagttttgttttatgggaactgctggaatggtgtttttgac |
14774410 |
T |
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| Q |
111 |
atcttcattaactggtgggatttgcatgacagcattgttgtctatgaatgtgttgggtggtgttatagtttatagagatgcatttggtggtttgaaagct |
210 |
Q |
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| T |
14774409 |
atcttcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgtttagagatgcatttggtggtgttaaggct |
14774310 |
T |
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| Q |
211 |
gtttcaactgttatgtgtatgtggggattttgttcttatgtttatggtatgtatgttaagatgttggaagagaaaggt |
288 |
Q |
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| T |
14774309 |
gtttcaactgttttgtgcatgtggggattctgttcttatgtttatggtatgtatgttaagatgttggaagagaaaggt |
14774232 |
T |
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