View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_low_28 (Length: 292)

Name: NF4501_low_28
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_low_28
NF4501_low_28
[»] chr6 (3 HSPs)
chr6 (1-284)||(31108938-31109216)
chr6 (1-91)||(33242509-33242595)
chr6 (1-93)||(27441648-27441736)
[»] chr3 (7 HSPs)
chr3 (1-93)||(10457798-10457886)
chr3 (5-94)||(4190170-4190255)
chr3 (1-64)||(34791935-34791994)
chr3 (1-67)||(9434230-9434292)
chr3 (1-40)||(25996374-25996413)
chr3 (1-97)||(51757699-51757790)
chr3 (22-96)||(19148895-19148965)
[»] chr2 (15 HSPs)
chr2 (1-95)||(34895645-34895735)
chr2 (5-101)||(18491815-18491907)
chr2 (1-97)||(41281876-41281968)
chr2 (1-67)||(11825586-11825648)
chr2 (1-95)||(12531567-12531657)
chr2 (1-98)||(43114663-43114756)
chr2 (1-67)||(4299352-4299414)
chr2 (7-95)||(6518398-6518482)
chr2 (4-67)||(966766-966825)
chr2 (1-69)||(4451880-4451944)
chr2 (1-73)||(14285782-14285850)
chr2 (11-91)||(16804084-16804160)
chr2 (11-91)||(16843366-16843442)
chr2 (1-67)||(12415392-12415454)
chr2 (1-67)||(12427452-12427514)
[»] chr1 (12 HSPs)
chr1 (1-97)||(35003400-35003492)
chr1 (1-67)||(45705931-45705993)
chr1 (1-94)||(26585568-26585657)
chr1 (1-94)||(38336024-38336113)
chr1 (1-65)||(48119734-48119794)
chr1 (1-91)||(35000021-35000107)
chr1 (1-91)||(45639640-45639726)
chr1 (4-73)||(41065260-41065325)
chr1 (1-92)||(45427652-45427739)
chr1 (1-67)||(38113127-38113189)
chr1 (1-67)||(44112783-44112845)
chr1 (1-74)||(46168489-46168558)
[»] chr7 (5 HSPs)
chr7 (1-95)||(31513393-31513483)
chr7 (1-92)||(40237025-40237112)
chr7 (1-95)||(31408537-31408627)
chr7 (1-95)||(33384977-33385067)
chr7 (1-93)||(27535137-27535225)
[»] chr4 (10 HSPs)
chr4 (1-91)||(55272284-55272370)
chr4 (5-92)||(19880064-19880147)
chr4 (1-67)||(35037111-35037173)
chr4 (5-73)||(960796-960860)
chr4 (1-64)||(17619087-17619146)
chr4 (1-67)||(712066-712128)
chr4 (1-67)||(38851619-38851681)
chr4 (1-91)||(48435487-48435573)
chr4 (4-98)||(46827607-46827697)
chr4 (45-94)||(32728503-32728552)
[»] chr5 (3 HSPs)
chr5 (1-73)||(17208180-17208248)
chr5 (1-91)||(30622627-30622713)
chr5 (1-67)||(32473326-32473388)
[»] chr8 (4 HSPs)
chr8 (1-91)||(10678060-10678146)
chr8 (1-67)||(35181622-35181684)
chr8 (1-93)||(34304894-34304981)
chr8 (1-40)||(19386520-19386559)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-93)||(45625-45713)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-73)||(35382-35450)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 31109216 - 31108938
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttttttata 100  Q
    ||||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31109216 cctctccctcttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacataggggtgcacatgtgtcaacactcttttttata 31109121  T
Q  101 tacattagaggctttaatacagctctcgtccnnnnnnnnnnngaacaaaaccacagttttgatctccttattttcaattgcgcaaattacattgaccaat 200  Q
    |||||||||||||||||||||||||||||||           || ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  31109120 tacattagaggctttaatacagctctcgtccttttttttttgga-caaaaccgcagttttgatctccttattttcaattgcgcaaatgacattgaccaat 31109022  T
Q  201 ctatgattttgaacatccaatttaatgacattgtaatatattcatatgaaaacaaagagcaaatgatagtatcaagagtataat 284  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109021 ctatgattttgaacatccaatttaataacattgtaatatattcatatgaaaacaaagagcaaatgatagtatcaagagtataat 31108938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 33242509 - 33242595
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||    
T  33242509 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 33242595  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 27441648 - 27441736
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 93  Q
    ||||||||| ||||||||| |||||||||||||| |||||    ||||||||||||||||||||||| || ||  |||||| ||| |||||||    
T  27441648 cctctcccttttccttgccacatgtcaggattttatgtgg----gtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactctt 27441736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 10457886 - 10457798
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 93  Q
    ||||||||| ||||||||| |||||||||||||||||||||    ||||||||||||||||||||||  ||||| |||||| |||||||||||    
T  10457886 cctctcccttttccttgccacatgtcaggattttgtgtgga----tgtaagaggtgtattgccacatgagggtatacatgtatcaacactctt 10457798  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 4190255 - 4190170
Alignment:
Q  5 tccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttt 94  Q
    ||||| ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||| ||||| |||||| ||| ||||||||    
T  4190255 tcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacataagggtatacatgtatcaccactcttt 4190170  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34791935 - 34791994
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgcca 64  Q
    ||||||||| ||||||||| |||||||||||||||||||||    |||||||||||||||||||    
T  34791935 cctctcccttttccttgccacatgtcaggattttgtgtgga----tgtaagaggtgtattgcca 34791994  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9434230 - 9434292
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    |||||| || ||||||||| |||||||| |||||||||||    |||||||||||||||||||||||    
T  9434230 cctctcacttttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgccacat 9434292  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25996374 - 25996413
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtgg 40  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  25996374 cctctcccttttccttgccacatgtcaggattttgtgtgg 25996413  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 51757699 - 51757790
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttt 97  Q
    ||||| ||| ||||||||| |||||||||||| |||||||    ||||||||||| ||||||||||| |||||  |||||| ||| ||||| |||||    
T  51757699 cctcttccttttccttgccacatgtcaggattgtgtgtgg----gtgtaagaggtatattgccacat-ggggtgtacatgtatcaccactcattttt 51757790  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 19148895 - 19148965
Alignment:
Q  22 atgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttttt 96  Q
    ||||||| |||||||||||    ||||||| ||||||||||||||| |||||  |||||||||| || |||||||    
T  19148895 atgtcagaattttgtgtgg----gtgtaagtggtgtattgccacatgggggtgtacatgtgtcaccattcttttt 19148965  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34895735 - 34895645
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 95  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||||||    
T  34895735 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactctttt 34895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 18491815 - 18491907
Alignment:
Q  5 tccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttttttatat 101  Q
    ||||| ||||||||| ||||| ||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||||||||||||    
T  18491815 tcccttttccttgccacatgttaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactcttttttatat 18491907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 41281968 - 41281876
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttt 97  Q
    |||||| || ||||||||| ||||||||||||||||||||    |||||||||||||||||||| || |||||  |||||| ||| |||||||||||    
T  41281968 cctctcacttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccatatgggggtgtacatgtatcaccactctttttt 41281876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11825648 - 11825586
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  11825648 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 11825586  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12531657 - 12531567
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 95  Q
    ||||||||| ||||||||| ||||||||||||||||||||    |||||||||||||||||||| || | |||  |||||| ||| |||||||||    
T  12531657 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccatatggaggtgtacatgtatcatcactctttt 12531567  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 43114663 - 43114756
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttta 98  Q
    ||||||||| ||||||||| | ||||||||||||||||||    |||||||||||||||||||||||  ||||  |||||| ||| ||||| ||||||    
T  43114663 cctctcccttttccttgccacttgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgagggtgtacatgtatcaccactcattttta 43114756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4299414 - 4299352
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||| |||||||||||||    
T  4299414 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagagatgtattgccacat 4299352  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 6518482 - 6518398
Alignment:
Q  7 cctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 95  Q
    ||||||||||||| ||||||||||||||||||||    |||||| |||||||||| ||||| | |||  |||||| ||| |||||||||    
T  6518482 cctcttccttgccacatgtcaggattttgtgtgg----gtgtaaaaggtgtattgacacatggaggtgtacatgtatcaccactctttt 6518398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 966825 - 966766
Alignment:
Q  4 ctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    |||||| ||||||||| ||||||||||||||||||||    |||||||||||||||| ||||||    
T  966825 ctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtatttccacat 966766  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4451944 - 4451880
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacatag 69  Q
    ||||||||| |||||| || ||||||||||||||||||||    |||||||| || |||||||||||||    
T  4451944 cctctcccttttccttcccacatgtcaggattttgtgtgg----gtgtaagaagtatattgccacatag 4451880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14285782 - 14285850
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 73  Q
    ||||||||| |||||| || ||||| |||||||| |||||    ||||||||||||||||| |||||||||||    
T  14285782 cctctcccttttccttaccacatgtgaggattttatgtgg----gtgtaagaggtgtattgtcacataggggt 14285850  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 16804084 - 16804160
Alignment:
Q  11 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| |||||||| |||||||||||    ||||||||||||||||| || ||||||||  |||||| ||| |||||    
T  16804084 ttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16804160  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 16843366 - 16843442
Alignment:
Q  11 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| |||||||| |||||||||||    ||||||||||||||||| || ||||||||  |||||| ||| |||||    
T  16843366 ttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16843442  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12415454 - 12415392
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||| ||||  |||||||| ||||||||||||    ||||||||||||||||||||||    
T  12415454 cctctcccttttctttgctacatgtcagaattttgtgtgga----tgtaagaggtgtattgccacat 12415392  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12427514 - 12427452
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||| ||||  |||||||| ||||||||||||    ||||||||||||||||||||||    
T  12427514 cctctcccttttctttgctacatgtcagaattttgtgtgga----tgtaagaggtgtattgccacat 12427452  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35003400 - 35003492
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttt 97  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||   ||||| ||| |||||||||||    
T  35003400 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtgcatgtatcaccactctttttt 35003492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 45705931 - 45705993
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  45705931 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 45705993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 26585568 - 26585657
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttt 94  Q
    ||||||||| ||||||||| |||||||||||||||||||||    |||||||| ||||||||| ||| |||||  |||||| ||| ||||||||    
T  26585568 cctctcccttttccttgccacatgtcaggattttgtgtgga----tgtaagagatgtattgccgcatgggggtgtacatgtatcaccactcttt 26585657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 38336024 - 38336113
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttt 94  Q
    ||||||||| ||||||||| ||||||||||||||||||| |    | ||||||||||||||||||||||||||  ||| || ||| ||||||||    
T  38336024 cctctcccttttccttgccacatgtcaggattttgtgtgaa----tataagaggtgtattgccacataggggtgtacaagtatcaccactcttt 38336113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48119734 - 48119794
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccac 65  Q
    ||||||||| ||||||||| ||||||||||||||||||||    |||||||||||||||||||||    
T  48119734 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccac 48119794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35000107 - 35000021
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| ||||||||| ||||||||||||||||    ||| ||||||||| ||||||||||||| |||||  |||||| ||| |||||    
T  35000107 cctctcccttttccttgccacatgtcaggattttgt----atgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 35000021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 45639726 - 45639640
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| ||||||||| ||||| ||||||||||||||    ||||||||||||||||||||||  |||||  |||||| ||| |||||    
T  45639726 cctctcccttttccttgccacatgttaggattttgtgtgg----gtgtaagaggtgtattgccacaagggggtgtacatgtatcaccactc 45639640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 41065260 - 41065325
Alignment:
Q  4 ctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 73  Q
    |||||| ||||||||| ||||||||||||||||| |||    |||||||||||||||||||||| |||||    
T  41065260 ctcccttttccttgccacatgtcaggattttgtgcgga----tgtaagaggtgtattgccacatgggggt 41065325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 45427739 - 45427652
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactct 92  Q
    ||||||||| |||||| || |||||||||||||||||||||||     ||||||||||||||||||| ||| |  |||||| ||| ||||||    
T  45427739 cctctcccttttccttaccacatgtcaggattttgtgtggatgg----aagaggtgtattgccacatggggatgtacatgtatcaccactct 45427652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38113189 - 38113127
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||| ||||| ||||||||||||||||||||    ||||||||||||||||| |||||    
T  38113189 cctctcccttttctttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgtcacat 38113127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44112783 - 44112845
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    |||||| || ||||||||| |||||||| |||||||||||    |||||||||||||||||||||||    
T  44112783 cctctcacttttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgccacat 44112845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46168489 - 46168558
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggta 74  Q
    ||||||||| || |||||| |||||||  |||||||||||    ||||||||| ||||||||||||| ||||||    
T  46168489 cctctccctttttcttgccacatgtcataattttgtgtgg----gtgtaagagatgtattgccacatgggggta 46168558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31513393 - 31513483
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 95  Q
    ||||||||| ||||||||| |||||||||||||||||| ||    ||||||||||||||||||||||| ||||  |||||| ||| |||||||||    
T  31513393 cctctcccttttccttgccacatgtcaggattttgtgtaga----tgtaagaggtgtattgccacataagggtgtacatgtatcaccactctttt 31513483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 40237025 - 40237112
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactct 92  Q
    |||||| || ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| ||||||    
T  40237025 cctctcacttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 40237112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31408627 - 31408537
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 95  Q
    ||||||||| ||||||||| |||||||||||||| |||||    ||||||||||||||||| ||||| |||||  |||||| ||| |||||||||    
T  31408627 cctctcccttttccttgccacatgtcaggattttatgtgg----gtgtaagaggtgtattgtcacatgggggtgtacatgtatcaccactctttt 31408537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33384977 - 33385067
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 95  Q
    ||||||||| ||||||||| ||| |||||||||||| |||    ||||||||||||||||| ||||| |||||  |||||| ||| |||||||||    
T  33384977 cctctcccttttccttgccacatatcaggattttgtatgg----gtgtaagaggtgtattgtcacatgggggtttacatgtatcaccactctttt 33385067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27535225 - 27535137
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 93  Q
    ||||||| | ||||||||| |||||||| ||||||||||||    |||||||| ||||||||||||| | || | |||||| ||| |||||||    
T  27535225 cctctcctttttccttgccacatgtcagaattttgtgtgga----tgtaagagatgtattgccacatggaggaatacatgtatcaccactctt 27535137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 55272370 - 55272284
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||    
T  55272370 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 55272284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 19880064 - 19880147
Alignment:
Q  5 tccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactct 92  Q
    ||||| ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| ||||||    
T  19880064 tcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 19880147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35037111 - 35037173
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  35037111 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 35037173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 960860 - 960796
Alignment:
Q  5 tccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 73  Q
    ||||| ||||||||| ||||||||||||||||||||    ||||||||||||||||| |||||||||||    
T  960860 tcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgtcacataggggt 960796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17619146 - 17619087
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgcca 64  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||||||||||||||    
T  17619146 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgcca 17619087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 712066 - 712128
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||| ||| ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  712066 cctcttccttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 712128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38851619 - 38851681
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||||||||| |||||||||||||||||||||    |||||||| |||||||||||||    
T  38851619 cctctcccttttccttgccacatgtcaggattttgtgtgga----tgtaagagatgtattgccacat 38851681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 48435573 - 48435487
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||| ||||||| ||||| |||||  |||||| ||| |||||    
T  48435573 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagagatgtattgtcacatgggggtgtacatgtatcaccactc 48435487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 46827697 - 46827607
Alignment:
Q  4 ctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttta 98  Q
    |||||| || |||||| ||||||||||||||||||||    ||||||||| |||||| |||||| | |||  |||||| ||| ||||||||||||    
T  46827697 ctccctttttcttgccacatgtcaggattttgtgtgg----gtgtaagagatgtatttccacatggaggtgtacatgtatcaccactctttttta 46827607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 32728503 - 32728552
Alignment:
Q  45 gtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttt 94  Q
    ||||||||||||||||||||||| |||||  |||||| ||| ||||||||    
T  32728503 gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactcttt 32728552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17208180 - 17208248
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 73  Q
    ||||||||| ||||||||| |||||||||||||||||||||    |||||||||||||||| |||||||||||    
T  17208180 cctctcccttttccttgccacatgtcaggattttgtgtgga----tgtaagaggtgtattgtcacataggggt 17208248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 30622713 - 30622627
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    |||||| || ||||||||| |||||||  |||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||    
T  30622713 cctctctcttttccttgccacatgtcaaaattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 30622627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32473388 - 32473326
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    ||||||||| ||| ||||| |||||||| |||||||||||    |||||||||||||||||||||||    
T  32473388 cctctcccttttctttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgccacat 32473326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 10678146 - 10678060
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 91  Q
    ||||||||| ||||||||| ||||||||||||||||||||    ||||||||| ||||||||||||| |||||  |||||| ||| |||||    
T  10678146 cctctcccttttccttgccacatgtcaggattttgtgtgg----gtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 10678060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35181622 - 35181684
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 67  Q
    |||||| || ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  35181622 cctctcacttttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 35181684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34304894 - 34304981
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 93  Q
    |||||| || ||||||||| |||||||||||||||| |||    ||||||||||||||||||||||| |||||  |||||| ||| |||||||    
T  34304894 cctctcacttttccttgccacatgtcaggattttgtttgg----gtgtaagaggtgtattgccacat-ggggtgtacatgtatcaccactctt 34304981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19386559 - 19386520
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtgg 40  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  19386559 cctctcccttttccttgccacatgtcaggattttgtgtgg 19386520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 45713 - 45625
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 93  Q
    ||||||||| ||||||||| |||||||||||||| |||||    ||||||||||||||||||||||| || ||  |||||| ||| |||||||    
T  45713 cctctcccttttccttgccacatgtcaggattttatgtgg----gtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactctt 45625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35450 - 35382
Alignment:
Q  1 cctctccctcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 73  Q
    ||||||||| ||||||||| |||||| ||||||||| |||    ||||||||||||||||||||||| |||||    
T  35450 cctctcccttttccttgccgcatgtctggattttgtatgg----gtgtaagaggtgtattgccacatgggggt 35382  T

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