View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_29 (Length: 287)
Name: NF4501_low_29
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 1101059 - 1100806
Alignment:
| Q |
18 |
tgaaccatcaaccaagtggttcattggttgaccacttttatacaacattagatctattacaagataattaaaggttaaaacgatttagaaataaaagtga |
117 |
Q |
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| T |
1101059 |
tgaaccatcaaccaagtggttcattggtggaccacttttatacaccattagatctattacaagataattaaaggttaaaacgatttagaaataaaagtga |
1100960 |
T |
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| Q |
118 |
gaacacatgtatattctcacgcacaataccta-ccccacccacccctctccgcccttctcatctctgtaatgtttccatgtaagaagtagaactccaaaa |
216 |
Q |
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| T |
1100959 |
gaacacatgtatattctcacgcacaatacctagtcccacccacccctctccgctcttctcatctctgtaatgtttccatgtaagaagtagaactccaaaa |
1100860 |
T |
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| Q |
217 |
ccacaacatctcctctcttaaaggtccattaaaagatataattatagcattaac |
270 |
Q |
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| T |
1100859 |
ccacaacatctcctctcttaaaggtccattaaaagatataattatagcattaac |
1100806 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 14050197 - 14050320
Alignment:
| Q |
16 |
gatgaaccatcaaccaagtggttcattggttgaccacttttatacaacattagatctattaca-agataattaaaggttaaaacgatttagaaataaaag |
114 |
Q |
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| T |
14050197 |
gatgaaccatcaaacaagtggttcatcggtgaactacttttatactctgttagatctattacagagataattaaatattgagatgacttagaaataaaag |
14050296 |
T |
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| Q |
115 |
tgagaacacatgtatattctcacg |
138 |
Q |
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| T |
14050297 |
tgagaatataggtatattttcacg |
14050320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 45281709 - 45281806
Alignment:
| Q |
18 |
tgaaccatcaaccaagtggttcattggttgaccacttttatacaacattagatctattac------aagataattaaaggttaaaacgatttagaaata |
110 |
Q |
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||||||||| | ||| |||||||||| ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| ||||||||| |
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| T |
45281709 |
tgaaccatcgatcaaatggttcattgcg-gaccacttttatacaccattagatttattacaagattaagataattaaaggttaaaacgagttagaaata |
45281806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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