View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4501_low_34 (Length: 262)

Name: NF4501_low_34
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4501_low_34
NF4501_low_34
[»] chr7 (2 HSPs)
chr7 (1-158)||(13916219-13916377)
chr7 (81-158)||(17320630-17320709)
[»] chr4 (2 HSPs)
chr4 (1-158)||(15777505-15777664)
chr4 (167-231)||(15777274-15777338)
[»] chr2 (1 HSPs)
chr2 (1-158)||(29067116-29067275)
[»] chr6 (3 HSPs)
chr6 (1-150)||(24032641-24032792)
chr6 (167-231)||(24032355-24032419)
chr6 (81-158)||(24021526-24021606)
[»] chr5 (3 HSPs)
chr5 (1-150)||(22262975-22263126)
chr5 (117-158)||(22283306-22283347)
chr5 (167-231)||(22263348-22263412)
[»] scaffold0268 (3 HSPs)
scaffold0268 (2-150)||(9337-9478)
scaffold0268 (117-158)||(14192-14233)
scaffold0268 (167-231)||(9768-9832)
[»] scaffold0031 (1 HSPs)
scaffold0031 (81-158)||(85027-85106)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 13916219 - 13916377
Alignment:
Q  1 caacaaattggaacaccttctgctttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgat 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13916219 caacaaattggaacaccttctgctttaccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgat 13916318  T
Q  101 agatatga-nnnnnnnncttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    ||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  13916319 agatatgatttttttttcttcaagatttttagtattttgatgaagtgaaacgtataatg 13916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 17320709 - 17320630
Alignment:
Q  81 gtgaataagtttagtgtgatagatatgannnnnnnn--cttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  17320709 gtgaataagtttagtgtgatagatatgatttttttttccttcaagatttttagtattttgatgaagtgaaacgtataatg 17320630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 15777664 - 15777505
Alignment:
Q  1 caacaaattggaacaccttctgctttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15777664 caacaaattggaacaccttctgctttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttactgtgat 15777565  T
Q  101 agatatga--nnnnnnnncttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    ||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  15777564 agatatgattttttttttcttcaagatttttagtattttgatgaagtgaaacgtataatg 15777505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 15777338 - 15777274
Alignment:
Q  167 aaataaactttttagtttattgatgaaattttacatattgatgaagtgagatgttgttctaatga 231  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  15777338 aaataaactttttagtatattgatgaagttttagatattgatgaagtgagatgttgttctaatga 15777274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 29067116 - 29067275
Alignment:
Q  1 caacaaattggaacaccttctgctttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgat 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29067116 caacaaattggaacaccttctactttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgat 29067215  T
Q  101 agatatga--nnnnnnnncttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    ||||||||          || |||||||||||||||||||||||||||||||||||||||    
T  29067216 agatatgattttttttttctccaagatttttagtattttgatgaagtgaaacgtataatg 29067275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 24032792 - 24032641
Alignment:
Q  1 caacaaattggaacaccttctgctttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgat 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  24032792 caacaaataggaacaccttctgctctgccgtgagttaacttattttttcatattatttgtgtattttgctgttgctatgcgtgaataagtgtagtgtgat 24032693  T
Q  101 agatatga--nnnnnnnncttcaagatttttagtattttgatgaagtgaaac 150  Q
    ||||||||          ||||||||||||||||||||||||||||||||||    
T  24032692 agatatgattttttttttcttcaagatttttagtattttgatgaagtgaaac 24032641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 24032419 - 24032355
Alignment:
Q  167 aaataaactttttagtttattgatgaaattttacatattgatgaagtgagatgttgttctaatga 231  Q
    ||||||||||||| || ||| |||||| ||||| |||||||||||||||||||||||| ||||||    
T  24032419 aaataaactttttggtatatggatgaagttttagatattgatgaagtgagatgttgttgtaatga 24032355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 24021606 - 24021526
Alignment:
Q  81 gtgaataagtttagtgtgatagatatgannnnnnnn---cttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    ||||||||||||||||||||||||||||           |||||| |||||||||||||||||||||||||||||||||||    
T  24021606 gtgaataagtttagtgtgatagatatgattttctttttccttcaacatttttagtattttgatgaagtgaaacgtataatg 24021526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 22262975 - 22263126
Alignment:
Q  1 caacaaattggaacaccttctgctttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgat 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  22262975 caacaaataggaacaccttctgctctgccgtgagttaacttattttttcatattatttgtgtattttgctgttgctatgcgtgaataagtgtagtgtgat 22263074  T
Q  101 agatatga--nnnnnnnncttcaagatttttagtattttgatgaagtgaaac 150  Q
    ||||||||          ||||||||||||||||||||||||||||||||||    
T  22263075 agatatgatttttttttccttcaagatttttagtattttgatgaagtgaaac 22263126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 22283306 - 22283347
Alignment:
Q  117 cttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  22283306 cttcaagatttttagtattttgatgaagtgaaacttataatg 22283347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 22263348 - 22263412
Alignment:
Q  167 aaataaactttttagtttattgatgaaattttacatattgatgaagtgagatgttgttctaatga 231  Q
    ||||||||||||| || ||| |||||| ||||| ||||||||||||||||||| | |||||||||    
T  22263348 aaataaactttttggtatatggatgaagttttagatattgatgaagtgagatgattttctaatga 22263412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 9337 - 9478
Alignment:
Q  2 aacaaattggaacaccttctgctttgccgtgagttaacttattttttcatattatttgtgtattctgctgttgctatgcgtgaataagtttagtgtgata 101  Q
    ||||||| |||||| |||||||| ||||||||||||  |||||| |||||       ||||||| ||||||||||||| ||| |||||| ||||||||||    
T  9337 aacaaataggaacagcttctgctctgccgtgagttacattatttattcat-------gtgtattttgctgttgctatgggtgtataagtgtagtgtgata 9429  T
Q  102 gatatgannnnnnnncttcaagatttttagtattttgatgaagtgaaac 150  Q
    |||||||         |||||||||||||||||||||||||||||||||    
T  9430 gatatgattttttttgttcaagatttttagtattttgatgaagtgaaac 9478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 14192 - 14233
Alignment:
Q  117 cttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14192 cttcaagatttttagtattttgatgaactgaaacgtataatg 14233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 9768 - 9832
Alignment:
Q  167 aaataaactttttagtttattgatgaaattttacatattgatgaagtgagatgttgttctaatga 231  Q
    |||||||||||| | | |||||||||| ||||| ||||||||||||||||||||| ||| |||||    
T  9768 aaataaacttttgactatattgatgaagttttagatattgatgaagtgagatgtttttccaatga 9832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 85027 - 85106
Alignment:
Q  81 gtgaataagtttagtgtgatagatatgannnnnnnn--cttcaagatttttagtattttgatgaagtgaaacgtataatg 158  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  85027 gtgaataagtttagtgtgatagatatgatttttttttccttcaagatttttagtattttgatgaagtgaaacgtataatg 85106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University