View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4501_low_35 (Length: 252)
Name: NF4501_low_35
Description: NF4501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4501_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 44695484 - 44695247
Alignment:
| Q |
17 |
aggacactttttctttgttttgatttcaccttttaaatacattgatctcaaatctttttggagtctttgaggaa--attaattaatgttttgtacggcag |
114 |
Q |
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| T |
44695484 |
aggacactttttctttgttttgatttcaccttttaaatacattgatctcaaatctttttggagtctttgaggaattattaattaatgttttgtacggcag |
44695385 |
T |
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| Q |
115 |
gaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggctgatcgatccatcatatcaacatt |
214 |
Q |
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| T |
44695384 |
gaatggtgaaactttgcctcaaatatcaaaggaatacataagagtaaagtaagtggtgcaagttagcatgcatggctgatcgatccatcatatcaacatt |
44695285 |
T |
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| Q |
215 |
acatttttccattttgccatgatgatgcacattgaaat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44695284 |
acatttttccattttgccatgatgatgcacattgaaat |
44695247 |
T |
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